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单一氢键控制家族 13 糖苷水解酶中转糖基化与水解的选择性。

A Single Hydrogen Bond Controls the Selectivity of Transglycosylation vs Hydrolysis in Family 13 Glycoside Hydrolases.

机构信息

State Key Laboratory of Food Science and Technology, Jiangnan University, 1800 Lihu Avenue, Wuxi, 214122, People's Republic of China.

School of Biotechnology and Key Laboratory of Industrial Biotechnology Ministry of Education, Jiangnan University, 1800 Lihu Avenue, Wuxi, 214122, People's Republic of China.

出版信息

J Phys Chem Lett. 2022 Jun 23;13(24):5626-5632. doi: 10.1021/acs.jpclett.2c01136. Epub 2022 Jun 15.

Abstract

Converting glycoside hydrolases (GHs) from hydrolytic to synthetic enzymes via transglycosylation is a long-standing goal for the biosynthesis of complex carbohydrates. However, the molecular determinants for the selectivity of transglycosylation (T) vs hydrolysis (H) are still not fully unraveled. Herein, we show experimentally that mutation of one active site residue can switch the enzyme activity between hydrolysis and transglycosylation in two highly homologous GHs. Further QM/MM simulations reveal that the mutation modulates the T vs H reaction barriers via the presence/absence of a single H-bond with the nucleophile Asp. Such a H-bond controls the product selectivity via a dual effect: on one hand, it facilitates the breaking of the glycosyl-enzyme intermediate. On the other, it displaces the sugar acceptor, resulting in a reduced affinity and significant steric repulsion for transglycosylation. These findings expand our understanding of the molecular mechanisms that modulate the T/H balance in GHs.

摘要

通过转糖苷将糖苷水解酶 (GHs) 从水解酶转化为合成酶是复杂碳水化合物生物合成的长期目标。然而,转糖苷 (T) 与水解 (H) 的选择性的分子决定因素仍未完全阐明。在此,我们通过实验表明,一个活性位点残基的突变可以在两种高度同源的 GH 中切换酶的水解和转糖苷活性。进一步的 QM/MM 模拟表明,突变通过与亲核试剂 Asp 存在/不存在单个氢键来调节 T 与 H 反应的势垒。这种氢键通过双重作用控制产物的选择性:一方面,它促进糖苷-酶中间体的断裂。另一方面,它取代了糖受体,导致对转糖苷的亲和力降低和显著的空间排斥。这些发现扩展了我们对调节 GH 中 T/H 平衡的分子机制的理解。

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