LABIRIS, 1 Avenue Emile Gryzon, 1070 Brussels, Belgium.
Center for Protein Engineering (CIP), Biological Macromolecules, University of Liège, 13 Allée du 6 Août, 4000 Liège, Belgium.
Acta Crystallogr D Struct Biol. 2022 Mar 1;78(Pt 3):278-289. doi: 10.1107/S2059798321013541. Epub 2022 Feb 18.
Transglycosylating glycoside hydrolases (GHs) offer great potential for the enzymatic synthesis of oligosaccharides. Although knowledge is progressing, there is no unique strategy to improve the transglycosylation yield. Obtaining efficient enzymatic tools for glycan synthesis with GHs remains dependent on an improved understanding of the molecular factors governing the balance between hydrolysis and transglycosylation. This enzymatic and structural study of RBcel1, a transglycosylase from the GH5_5 subfamily isolated from an uncultured bacterium, aims to unravel such factors. The size of the acceptor and donor sugars was found to be critical since transglycosylation is efficient with oligosaccharides at least the size of cellotetraose as the donor and cellotriose as the acceptor. The reaction pH is important in driving the balance between hydrolysis and transglycosylation: hydrolysis is favored at pH values below 8, while transglycosylation becomes the major reaction at basic pH. Solving the structures of two RBcel1 variants, RBcel1_E135Q and RBcel1_Y201F, in complex with ligands has brought to light some of the molecular factors behind transglycosylation. The structure of RBcel1_E135Q in complex with cellotriose allowed a +3 subsite to be defined, in accordance with the requirement for cellotriose as a transglycosylation acceptor. The structure of RBcel1_Y201F has been obtained with several transglycosylation intermediates, providing crystallographic evidence of transglycosylation. The catalytic cleft is filled with (i) donors ranging from cellotriose to cellohexaose in the negative subsites and (ii) cellobiose and cellotriose in the positive subsites. Such a structure is particularly relevant since it is the first structure of a GH5 enzyme in complex with transglycosylation products that has been obtained with neither of the catalytic glutamate residues modified.
转糖苷糖苷水解酶 (GHs) 在寡糖的酶法合成中具有巨大的潜力。尽管相关知识在不断进步,但目前仍没有提高转糖苷产率的通用策略。利用 GHs 高效合成糖苷酶,仍然依赖于对控制水解和转糖苷平衡的分子因素的深入了解。本研究对 RBcel1 进行了酶学和结构研究,RBcel1 是从一种未培养细菌中分离的 GH5_5 亚家族的转糖苷酶,旨在揭示这些因素。研究发现,接受体和供体糖的大小是关键因素,因为只有当供体为至少具有纤维四糖大小的寡糖、接受体为纤维三糖时,转糖苷才会有效进行。反应 pH 值对水解和转糖苷平衡有重要影响:低于 8 时,水解有利于反应;而在碱性 pH 值下,转糖苷成为主要反应。解析 RBcel1 两种变体 RBcel1_E135Q 和 RBcel1_Y201F 与配体形成复合物的结构,揭示了转糖苷背后的一些分子因素。RBcel1_E135Q 与纤维三糖复合物的结构定义了一个+3 亚位点,符合纤维三糖作为转糖苷接受体的要求。获得了 RBcel1_Y201F 与多个转糖苷中间体的复合物结构,提供了转糖苷的晶体学证据。催化裂缝充满了(i)从纤维三糖到纤维六糖的负亚位点供体,以及(ii)正亚位点的纤维二糖和纤维三糖。这种结构特别相关,因为它是第一个获得的 GH5 酶与转糖苷产物形成复合物的结构,而其中没有一个催化谷氨酸残基被修饰。