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草莓中WRKY转录因子家族的综合研究

A Comprehensive Study of the WRKY Transcription Factor Family in Strawberry.

作者信息

Garrido-Gala José, Higuera José-Javier, Rodríguez-Franco Antonio, Muñoz-Blanco Juan, Amil-Ruiz Francisco, Caballero José L

机构信息

Phytoplant Research SLU, 14071 Córdoba, Spain.

Departamento de Bioquímica y Biología Molecular, Campus Universitario de Rabanales y Campus de Excelencia Internacional Agroalimentario ceiA3, Edificio Severo Ochoa-C6, Universidad de Córdoba, 14071 Córdoba, Spain.

出版信息

Plants (Basel). 2022 Jun 15;11(12):1585. doi: 10.3390/plants11121585.

DOI:10.3390/plants11121585
PMID:35736736
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9229891/
Abstract

WRKY transcription factors play critical roles in plant growth and development or stress responses. Using up-to-date genomic data, a total of 64 and 257 WRKY genes have been identified in the diploid woodland strawberry, , and the more complex allo-octoploid commercial strawberry, × cv. Camarosa, respectively. The completeness of the new genomes and annotations has enabled us to perform a more detailed evolutionary and functional study of the strawberry WRKY family members, particularly in the case of the cultivated hybrid, in which homoeologous and paralogous genes have been characterized. Analysis of the available expression profiles has revealed that many strawberry genes show preferential or tissue-specific expression. Furthermore, significant differential expression of several genes has been clearly detected in fruit receptacles and achenes during the ripening process and pathogen challenged, supporting a precise functional role of these strawberry genes in such processes. Further, an extensive analysis of predicted development, stress and hormone-responsive cis-acting elements in the strawberry WRKY family is shown. Our results provide a deeper and more comprehensive knowledge of the gene family in strawberry.

摘要

WRKY转录因子在植物生长发育和胁迫反应中发挥着关键作用。利用最新的基因组数据，在二倍体森林草莓（Fragaria vesca）和更为复杂的异源八倍体栽培草莓（F. × ananassa cv. Camarosa）中分别鉴定出了64个和257个WRKY基因。新基因组和注释的完整性使我们能够对草莓WRKY家族成员进行更详细的进化和功能研究，特别是在栽培杂种草莓中，其中同源基因和旁系同源基因已得到表征。对现有表达谱的分析表明，许多草莓WRKY基因表现出优先表达或组织特异性表达。此外，在果实成熟过程和病原体攻击期间，在果实托和瘦果中明显检测到几个WRKY基因的显著差异表达，这支持了这些草莓WRKY基因在这些过程中发挥精确的功能作用。此外，还展示了对草莓WRKY家族中预测的发育、胁迫和激素响应顺式作用元件的广泛分析。我们的结果为草莓WRKY基因家族提供了更深入、更全面的认识。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f459/9229891/882a699761ef/plants-11-01585-g010.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f459/9229891/c342ebcdf069/plants-11-01585-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f459/9229891/92906f1549c7/plants-11-01585-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f459/9229891/a0fba4550a28/plants-11-01585-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f459/9229891/228e87c03d75/plants-11-01585-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f459/9229891/4b40eea0270d/plants-11-01585-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f459/9229891/4a9a4dcfdd3d/plants-11-01585-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f459/9229891/c52cfdc93349/plants-11-01585-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f459/9229891/c7174c82b99c/plants-11-01585-g008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f459/9229891/772c890bbb1b/plants-11-01585-g009.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f459/9229891/882a699761ef/plants-11-01585-g010.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f459/9229891/c342ebcdf069/plants-11-01585-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f459/9229891/92906f1549c7/plants-11-01585-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f459/9229891/a0fba4550a28/plants-11-01585-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f459/9229891/228e87c03d75/plants-11-01585-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f459/9229891/4b40eea0270d/plants-11-01585-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f459/9229891/4a9a4dcfdd3d/plants-11-01585-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f459/9229891/c52cfdc93349/plants-11-01585-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f459/9229891/c7174c82b99c/plants-11-01585-g008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f459/9229891/772c890bbb1b/plants-11-01585-g009.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f459/9229891/882a699761ef/plants-11-01585-g010.jpg

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