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中国李的系统发育分析:一种浆果作物遗传改良的基础

Phylogenetic Analysis of L. in China: A Basis for Genetic Improvement of a Berry Crop.

作者信息

Cheng Chunsong, Fan Siqing, Wang Canjian, Ye Linlin, Wang Zupeng, Huang Hongwen

机构信息

Lushan Botanical Garden, Chinese Academic of Sciences, Jiujiang, China.

Jiangxi University of Chinese Medicine, Nanchang, China.

出版信息

Front Plant Sci. 2022 Jun 9;13:899079. doi: 10.3389/fpls.2022.899079. eCollection 2022.

Abstract

L. is found in wild or grown as ornamental plants and is increasingly regarded as underutilized berry shrubs by breeders. This genus has cosmopolitan distribution with various species widely distributed in China, Europe, the United States, and Canada. Interspecific hybrids, which have been reported several times, have attracted intense interest from plant breeders attempting to develop a fruit crop of . Orthogonal projections to latent structures discriminant analysis (OPLS-DA) is a powerful statistical modeling tool that provides insights into separations between experimental groups. In this study, the molecular phylogeny of species was first discussed using the ITS and matK sequences for guiding the construction of a genetic basis pool. A morphological OPLS-DA clustering model based on the genetic divergence was also constructed for the first time, which effectively realized the morphological grouping of Chinese species. The results showed that a total of 10 wild species widely distributed in China have the potential to develop fruit crops. Particularly, has the potential to provide a founder species with a large fruit size, while has the potential to provide important genetic resources with long pedicel. and could be used to domesticate hybrids without spines, and the other five climbing shrubs could be used to develop high-yield crown-type commercial cultivars for automated field management. The top five contributing morphological traits affecting the current clustering model were V9 (flower color), V1 (flowering), V5 (evergreen or deciduous), V3 (leaf size), and V2 (fruiting). Furthermore, the grouping analysis indicated that the V9 was the most important factor affecting morphological clustering. Thereafter, the temporally calibrated phylogeny inferred from the matK sequence was used to reconstruct the origin and evolution of the genus , and the results inferred an interesting geographic distribution pattern and potential cross-species interactions of species at low latitudes in China. Our study also highlighted dispersal pattern investigation and genetic background analysis to improve future practices and policies related to species introduction of genetic basis pool.

摘要

L. 生长于野外或作为观赏植物种植,越来越被育种者视为未充分利用的浆果灌木。该属植物分布于世界各地,在中国、欧洲、美国和加拿大广泛分布着各种物种。已被多次报道的种间杂交种引起了试图培育某种水果作物的植物育种者的浓厚兴趣。正交投影到潜在结构判别分析(OPLS-DA)是一种强大的统计建模工具,可深入了解实验组之间的差异。在本研究中,首先使用ITS和matK序列讨论了 物种的分子系统发育,以指导遗传基础库的构建。还首次构建了基于遗传差异的形态学OPLS-DA聚类模型,有效实现了中国 物种的形态学分组。结果表明,在中国广泛分布的共有10个野生种具有开发水果作物的潜力。特别是, 有潜力提供果实大的奠基物种,而 有潜力提供具有长花梗的重要遗传资源。 和 可用于驯化无刺杂交种,其他五种攀缘灌木可用于开发高产树冠型商业品种以实现田间自动化管理。影响当前聚类模型的前五个重要形态性状是V9(花色)、V1(开花)、V5(常绿或落叶)、V3(叶大小)和V2(结果)。此外,分组分析表明V9是影响形态聚类的最重要因素。此后,利用从matK序列推断的时间校准系统发育来重建 属的起源和进化,结果推断出中国低纬度地区 物种有趣的地理分布模式和潜在的跨物种相互作用。我们的研究还强调了扩散模式调查和遗传背景分析,以改进未来与遗传基础库物种引入相关的实践和政策。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/59fb/9223766/83399b1fd09b/fpls-13-899079-g001.jpg

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