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胡颓子科(胡颓子属)的完整质体基因组序列:一种亚洲特有植物物种。

Complete plastome sequence of (Elaeagnaceae): an Asian endemic plant species.

作者信息

Zhao Kun-Kun, Wang Jian-Hua, Zhu Zhi-Xin, Shi Guo-Zheng, Luo Shui-Xing, Wang Hua-Feng

机构信息

The Experimental Station of Research Institute of Tropical Forestry, Chinese Academy of Forestry, Jianfeng, China.

Key Laboratory of Tropical Biological Resources of Ministry of Education, School of Life and Pharmaceutical Sciences, Hainan University, Haikou, China.

出版信息

Mitochondrial DNA B Resour. 2019 Dec 13;5(1):288-289. doi: 10.1080/23802359.2019.1702483.

DOI:10.1080/23802359.2019.1702483
PMID:33366523
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7748609/
Abstract

is an evergreen vine or climbing shrub with 5 m height. It is widespread in southern China. It grows in the sunny forests or forest margins below 1000 m a.s.l. In this paper, we report and describe the complete plastome of in order to provide useful genomic data for its systematic research. The complete plastome of is 152,555 bp with a typical quadripartite structure of angiosperms. It contains two Inverted Repeats (IRs) of 25,918 bp, a large single-copy (LSC) of 82,408 bp, and a small single-copy (SSC) region of 18,311 bp. The complete plastome contains 129 genes, including 83 protein-coding genes, 38 tRNA genes, and eight rRNA genes. The overall A/T content in the chloroplast genome of is 62.90%. The phylogenetic analysis indicated that is close to within Elaeagnaceae. The complete plastome of will provide useful resources for the development and utilization of this species and the phylogenetic study of Rosales.

摘要

是一种常绿藤本或攀援灌木,高5米。它在中国南方广泛分布。生长于海拔1000米以下阳光充足的森林或林缘。在本文中,我们报道并描述了的完整质体基因组,以便为其系统研究提供有用的基因组数据。的完整质体基因组为152,555 bp,具有被子植物典型的四分体结构。它包含两个25,918 bp的反向重复序列(IRs)、一个82,408 bp的大单拷贝(LSC)和一个18,311 bp的小单拷贝(SSC)区域。完整的质体基因组包含129个基因,包括83个蛋白质编码基因、38个tRNA基因和8个rRNA基因。的叶绿体基因组中A/T的总体含量为62.90%。系统发育分析表明,在胡颓子科中与接近。的完整质体基因组将为该物种的开发利用和蔷薇目系统发育研究提供有用资源。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4caa/7748609/b91fac072611/TMDN_A_1702483_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4caa/7748609/b91fac072611/TMDN_A_1702483_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4caa/7748609/b91fac072611/TMDN_A_1702483_F0001_B.jpg

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本文引用的文献

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NGS QC Toolkit: a toolkit for quality control of next generation sequencing data.
沙棘杂交品种“绿沙棘”(胡颓子科)叶绿体基因组特征分析及系统发育分析
Mitochondrial DNA B Resour. 2023 Dec 18;8(12):1416-1420. doi: 10.1080/23802359.2023.2292156. eCollection 2023.
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