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揭示埃塞俄比亚特有动物群的多样性：四种啮齿目鼠科动物的完整线粒体基因组

Uncovering the diversity of endemic Ethiopian fauna: complete mitochondrial genomes of four species (Rodentia, Muridae).

作者信息

Komarova Valeria A, Mugue Nikolai S, Kostin Danila S, Lavrenchenko Leonid A

机构信息

Laboratory of Mammalian Microevolution, A.N. Severtsov Institute of Ecology and Evolution RAS, Moscow, Russia.

Laboratory of Molecular Genetics, Russian Federal Research Institute of Fisheries and Oceanography, Moscow, Russia.

出版信息

Mitochondrial DNA B Resour. 2022 Jun 14;7(6):1001-1004. doi: 10.1080/23802359.2022.2079435. eCollection 2022.

DOI:10.1080/23802359.2022.2079435
PMID:35756435
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9225773/
Abstract

Complete mitochondrial genomes of four species of Ethiopian speckled brush-furred rats (, , and ) were assembled for the first time. We provide data concerning the sequencing, assembly, and annotation of the obtained mitogenomes; compare two widely used circular-genome annotation tools (MITOS and MitoZ), and discuss relevant points concerning relationships within both Ethiopian and the Muridae family.

摘要

首次组装了四种埃塞俄比亚斑点刷毛鼠（、和）的完整线粒体基因组。我们提供了有关所获得的线粒体基因组的测序、组装和注释的数据；比较了两种广泛使用的环状基因组注释工具（MITOS和MitoZ），并讨论了有关埃塞俄比亚鼠类以及鼠科内部关系的相关要点。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2945/9225773/61b3f10be090/TMDN_A_2079435_F0001_C.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2945/9225773/61b3f10be090/TMDN_A_2079435_F0001_C.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2945/9225773/61b3f10be090/TMDN_A_2079435_F0001_C.jpg

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Mitochondrial DNA B Resour. 2022 Jun 14;7(6):1001-1004. doi: 10.1080/23802359.2022.2079435. eCollection 2022.
2
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本文引用的文献

1
Complex reticulate evolution of speckled brush-furred rats (Lophuromys) in the Ethiopian centre of endemism.埃塞俄比亚特有中心地区斑点刷尾鼠（Lophuromys）的复杂网状进化。
Mol Ecol. 2021 May;30(10):2349-2365. doi: 10.1111/mec.15891. Epub 2021 Apr 2.
2
Nuclear phylogenomics, but not mitogenomics, resolves the most successful Late Miocene radiation of African mammals (Rodentia: Muridae: Arvicanthini).核系统发生基因组学，而不是线粒体基因组学，解决了最成功的非洲哺乳动物（啮齿目：鼠科：非洲灌丛豪猪族）的晚中新世辐射。
Mol Phylogenet Evol. 2021 Apr;157:107069. doi: 10.1016/j.ympev.2021.107069. Epub 2021 Jan 6.
3
MitoZ: a toolkit for animal mitochondrial genome assembly, annotation and visualization.
MitoZ：动物线粒体基因组组装、注释和可视化的工具包。
Nucleic Acids Res. 2019 Jun 20;47(11):e63. doi: 10.1093/nar/gkz173.
4
Fossils know it best: Using a new set of fossil calibrations to improve the temporal phylogenetic framework of murid rodents (Rodentia: Muridae).化石最清楚：利用一组新的化石校准数据来改进鼠科（啮齿目：鼠科）的时间系统发育框架。
Mol Phylogenet Evol. 2018 Nov;128:98-111. doi: 10.1016/j.ympev.2018.07.017. Epub 2018 Jul 17.
5
Reticulate Pleistocene evolution of Ethiopian rodent genus along remarkable altitudinal gradient.埃塞俄比亚啮齿动物属在更新世沿显著海拔梯度的网状演化。
Mol Phylogenet Evol. 2018 Jan;118:75-87. doi: 10.1016/j.ympev.2017.09.020. Epub 2017 Sep 27.
6
NOVOPlasty: de novo assembly of organelle genomes from whole genome data.NOVOPlasty：从头组装细胞器基因组的全基因组数据。
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IQ-TREE: a fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies.IQ-TREE：一种用于估计最大似然系统发育树的快速且有效的随机算法。
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