Fuellen Georg, Jünemann Anselm
Institute for Biostatistics and Informatics in Medicine and Aging Research, Rostock University Medical Center, Rostock, Germany.
Department of Ophthalmology, Rostock University Medical Center, Rostock, Germany.
Front Neurosci. 2022 Jun 8;16:912043. doi: 10.3389/fnins.2022.912043. eCollection 2022.
Glaucoma treatment options as well as its etiology are far from understood. Gene expression (transcriptomics) data of the anterior segment of the eye can help by elucidating the molecular-mechanistic underpinnings, and we present an up-to-date description and discussion of what gene expression data are publicly available, and for which purposes these can be used. We feature the few resources covering all segments of the eye, and we then specifically focus on the anterior segment, and provide an extensive list of the Gene Expression Omnibus data that may be useful. We also feature single-cell data of relevance, particularly three datasets from tissues of relevance to aqueous humor outflow. We describe how the data have been used by researchers, by following up resource citations and data re-analyses. We discuss datasets and analyses pertaining to fibrosis following glaucoma surgery, and to glaucoma resulting from the use of steroids. We conclude by pointing out the current lack and underutilization of ocular gene expression data, and how the state of the art is expected to improve in the future.
青光眼的治疗方案及其病因仍远未被完全理解。眼部前段的基因表达(转录组学)数据有助于阐明其分子机制基础,我们将对公开可用的基因表达数据进行最新描述和讨论,并说明这些数据的用途。我们介绍了少数涵盖眼部所有部位的资源,然后特别关注前段,并提供了一份可能有用的基因表达综合数据库的详尽列表。我们还重点介绍了相关的单细胞数据,特别是来自与房水流出相关组织的三个数据集。我们通过追踪资源引用和数据重新分析,描述了研究人员如何使用这些数据。我们讨论了与青光眼手术后纤维化以及使用类固醇导致的青光眼相关的数据集和分析。最后,我们指出目前眼部基因表达数据的缺乏和未充分利用情况,以及预计未来该领域将如何取得进展。