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从二噁英污染土壤中分离得到的粘质沙雷氏菌SSA1的基因组序列草图

Draft Genome Sequence of Serratia marcescens SSA1, Isolated from Dioxin-Polluted Soil.

作者信息

Saibu Salametu, Akinyemi Nwanneka M, Odunsi Ayodeji A, Nsa Imade Y, Oyetibo Ganiyu O, Adebusoye Sunday A

机构信息

Department of Microbiology, Faculty of Science, University of Lagos, Lagos, Nigeria.

出版信息

Microbiol Resour Announc. 2022 Jul 21;11(7):e0023622. doi: 10.1128/mra.00236-22. Epub 2022 Jun 27.

DOI:10.1128/mra.00236-22
PMID:35758755
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9302123/
Abstract

Serratia marcescens SSA1 was isolated from a dump site with a history of incineration. Its DNA of 5.05 Mbp has a GC content of 59.65%, with 77 tRNA genes and 3 rRNA genes. Its 4,909 putative PATRIC protein-coding genes include genes responsible for the degradation of dioxins and other xenobiotics and total consumption of benzoate.

摘要

粘质沙雷氏菌SSA1是从一个有焚烧历史的垃圾场分离出来的。它的DNA为5.05 Mbp，GC含量为59.65%，有77个tRNA基因和3个rRNA基因。其4909个推定的PATRIC蛋白质编码基因包括负责二恶英和其他异生物质降解以及苯甲酸完全消耗的基因。

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本文引用的文献

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Biodegradation. 2020 Apr;31(1-2):123-137. doi: 10.1007/s10532-020-09898-8. Epub 2020 Apr 27.
2
The PATRIC Bioinformatics Resource Center: expanding data and analysis capabilities.PATRIC 生物信息学资源中心：扩展数据和分析功能。
Nucleic Acids Res. 2020 Jan 8;48(D1):D606-D612. doi: 10.1093/nar/gkz943.
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Versatile genome assembly evaluation with QUAST-LG.QUAST-LG 进行多功能基因组组装评估。
Bioinformatics. 2018 Jul 1;34(13):i142-i150. doi: 10.1093/bioinformatics/bty266.
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PLoS Comput Biol. 2017 Jun 8;13(6):e1005595. doi: 10.1371/journal.pcbi.1005595. eCollection 2017 Jun.
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QUAST: quality assessment tool for genome assemblies.QUAST：基因组组装质量评估工具。
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