潜在生物杀虫剂高见眉山拟青霉的基因组序列草图
Draft Genome Sequence of Purpureocillium takamizusanense, a Potential Bioinsecticide.
作者信息
Nguyen Ngoc-Hung, Tamura Tomokazu, Shimizu Kiminori
机构信息
Department of Biological Science and Technology, Tokyo University of Science, Katsushika, Tokyo, Japan.
Medical Mycology Research Center, Chiba University, Chuo-ku, Chiba, Japan.
出版信息
Microbiol Resour Announc. 2022 Jul 21;11(7):e0026822. doi: 10.1128/mra.00268-22. Epub 2022 Jun 28.
Abstract
To investigate the biocontrol capability of the entomopathogenic fungus Purpureocillium takamizusanense, the genome of the wild-type strain isolated from synnemata on Meimuna opalifera, was sequenced using a combination of HiSeq and Nanopore technologies, and annotated using evidence from RNA sequences and protein sequences from its sister species Purpureocillium lilacinum.
摘要
为了研究昆虫病原真菌高见紫僵菌的生物防治能力，使用HiSeq和纳米孔技术相结合的方法，对从大青叶蝉菌核上分离出的野生型菌株的基因组进行了测序，并利用其姊妹种淡紫紫僵菌的RNA序列和蛋白质序列证据进行了注释。
相似文献
1
Draft Genome Sequence of Purpureocillium takamizusanense, a Potential Bioinsecticide.潜在生物杀虫剂高见眉山拟青霉的基因组序列草图
Microbiol Resour Announc. 2022 Jul 21;11(7):e0026822. doi: 10.1128/mra.00268-22. Epub 2022 Jun 28.
2
A novel monopartite dsRNA virus isolated from the entomopathogenic and nematophagous fungus Purpureocillium lilacinum.从昆虫病原和捕食线虫真菌淡紫紫孢菌中分离出的一种新型单分体双链RNA病毒。
Arch Virol. 2016 Dec;161(12):3375-3384. doi: 10.1007/s00705-016-3045-y. Epub 2016 Sep 3.
3
Whole genome annotation and comparative genomic analyses of bio-control fungus Purpureocillium lilacinum.生防真菌淡紫紫孢菌的全基因组注释及比较基因组分析
BMC Genomics. 2015 Nov 25;16:1004. doi: 10.1186/s12864-015-2229-2.
4
Purpureocillium, a new genus for the medically important Paecilomyces lilacinus.紫僵菌，医学上重要的淡紫拟青霉的一个新属。
FEMS Microbiol Lett. 2011 Aug;321(2):141-9. doi: 10.1111/j.1574-6968.2011.02322.x. Epub 2011 Jun 23.
5
Genome and Transcriptome Sequences Reveal the Specific Parasitism of the Nematophagous Purpureocillium lilacinum 36-1.基因组和转录组序列揭示了食线虫淡紫紫孢菌36-1的特殊寄生特性。
Front Microbiol. 2016 Jul 19;7:1084. doi: 10.3389/fmicb.2016.01084. eCollection 2016.
6
Isaria takamizusanensis is the anamorph of Cordyceps ryogamimontana, warranting a new combination, Purpureocillium takamizusanense comb. nov.高见佐山棒束孢是龙伽山虫草的无性型，因此需要一个新组合，即高见佐山紫青霉新组合。
Int J Syst Evol Microbiol. 2015 Aug;65(8):2459-2465. doi: 10.1099/ijs.0.000284. Epub 2015 Apr 24.
7
Isolation and Characterization of the Polyhexamethylene Biguanide Hydrochloride-Resistant Fungus, Purpureocillium lilacinum.聚六亚甲基双胍盐酸盐抗性真菌——淡紫拟青霉的分离与鉴定。
Biocontrol Sci. 2021;26(3):157-166. doi: 10.4265/bio.26.157.
8
An unusual case of hyalohyphomycosis due to in a patient with myasthenia gravis.一例重症肌无力患者发生由[未提及具体真菌名称]引起的透明丝孢霉病的罕见病例。
Curr Med Mycol. 2018 Jun;4(2):36-39. doi: 10.18502/cmm.4.2.62.
9
Genome-Wide Identification and Characterization of the Cyclophilin Gene Family in the Nematophagous Fungus .基于全基因组鉴定和特征分析的食线虫真菌环肽基因家族
Int J Mol Sci. 2019 Jun 18;20(12):2978. doi: 10.3390/ijms20122978.
10
Virulence of the Bio-Control Fungus Purpureocillium lilacinum Against Myzus persicae (Hemiptera: Aphididae) and Spodoptera frugiperda (Lepidoptera: Noctuidae).淡紫拟青霉对烟粉虱和草地贪夜蛾的毒力。
J Econ Entomol. 2022 Apr 13;115(2):462-473. doi: 10.1093/jee/toab270.
引用本文的文献
1
Potential Functions and Transmission Dynamics of Fungi Associated with Across Different Life Stages, Between Sexes, and Between Habitats.与不同生命阶段、性别和栖息地相关的真菌的潜在功能和传播动态。
Insects. 2025 Mar 5;16(3):273. doi: 10.3390/insects16030273.
2
Comparative Mitogenomics Analysis Revealed Evolutionary Divergence among Species and Gene Arrangement and Intron Dynamics of Ophiocordycipitaceae.比较线粒体基因组学分析揭示了蛇孢虫草科物种间的进化差异以及基因排列和内含子动态变化。
Microorganisms. 2024 Oct 11;12(10):2053. doi: 10.3390/microorganisms12102053.
本文引用的文献
1
Complete mitochondrial genome of the important bio-control fungus (Ophiocordycipitaceae, Hypocreales) and its phylogenetic analysis.重要生防真菌（麦角菌科，肉座菌目）的线粒体全基因组及其系统发育分析
Mitochondrial DNA B Resour. 2019 Dec 13;5(1):240-242. doi: 10.1080/23802359.2019.1699466.
2
RepeatModeler2 for automated genomic discovery of transposable element families.RepeatModeler2 用于自动发现转座元件家族的基因组。
Proc Natl Acad Sci U S A. 2020 Apr 28;117(17):9451-9457. doi: 10.1073/pnas.1921046117. Epub 2020 Apr 16.
3
Minimap2: pairwise alignment for nucleotide sequences.Minimap2：核苷酸序列的两两比对。
Bioinformatics. 2018 Sep 15;34(18):3094-3100. doi: 10.1093/bioinformatics/bty191.
4
NanoPack: visualizing and processing long-read sequencing data.NanoPack：可视化和处理长读测序数据。
Bioinformatics. 2018 Aug 1;34(15):2666-2669. doi: 10.1093/bioinformatics/bty149.
5
SeqKit: A Cross-Platform and Ultrafast Toolkit for FASTA/Q File Manipulation.SeqKit：一个用于FASTA/Q文件操作的跨平台超快速工具包。
PLoS One. 2016 Oct 5;11(10):e0163962. doi: 10.1371/journal.pone.0163962. eCollection 2016.
6
BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs.BUSCO：利用单拷贝同源基因评估基因组组装和注释的完整性。
Bioinformatics. 2015 Oct 1;31(19):3210-2. doi: 10.1093/bioinformatics/btv351. Epub 2015 Jun 9.
7
Isaria takamizusanensis is the anamorph of Cordyceps ryogamimontana, warranting a new combination, Purpureocillium takamizusanense comb. nov.高见佐山棒束孢是龙伽山虫草的无性型，因此需要一个新组合，即高见佐山紫青霉新组合。
Int J Syst Evol Microbiol. 2015 Aug;65(8):2459-2465. doi: 10.1099/ijs.0.000284. Epub 2015 Apr 24.
8
HISAT: a fast spliced aligner with low memory requirements.HISAT：一种内存需求低的快速剪接比对器。
Nat Methods. 2015 Apr;12(4):357-60. doi: 10.1038/nmeth.3317. Epub 2015 Mar 9.
9
Widespread occurrence of organelle genome-encoded 5S rRNAs including permuted molecules.包括重排分子在内的细胞器基因组编码的5S rRNA广泛存在。
Nucleic Acids Res. 2014 Dec 16;42(22):13764-77. doi: 10.1093/nar/gku1266. Epub 2014 Nov 27.
10
Pilon: an integrated tool for comprehensive microbial variant detection and genome assembly improvement.Pilon：一种用于全面微生物变异检测和基因组组装改进的集成工具。
PLoS One. 2014 Nov 19;9(11):e112963. doi: 10.1371/journal.pone.0112963. eCollection 2014.
Zotero 插件