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后生动物线粒体内含子的空前频率。

Unprecedented frequency of mitochondrial introns in colonial bilaterians.

机构信息

Department of Life Sciences, Natural History Museum, Cromwell Road, London, SW7 5BD, UK.

Marine Biological Association, The Laboratory, Citadel Hill, Plymouth, PL1 2PB, Devon, UK.

出版信息

Sci Rep. 2022 Jun 28;12(1):10889. doi: 10.1038/s41598-022-14477-3.

DOI:10.1038/s41598-022-14477-3
PMID:35764672
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9240083/
Abstract

Animal mitogenomes are typically devoid of introns. Here, we report the largest number of mitochondrial introns ever recorded from bilaterian animals. Mitochondrial introns were identified for the first time from the phylum Bryozoa. They were found in four species from three families (Order Cheilostomatida). A total of eight introns were found in the complete mitogenome of Exechonella vieirai, and five, 17 and 18 introns were found in the partial mitogenomes of Parantropora penelope, Discoporella cookae and Cupuladria biporosa, respectively. Intron-encoded protein domains reverse transcriptase and intron maturase (RVT-IM) were identified in all species. Introns in E. vieirai and P. penelope had conserved Group II intron ribozyme domains V and VI. Conserved domains were lacking from introns in D. cookae and C. biporosa, preventing their further categorization. Putative origins of metazoan introns were explored in a phylogenetic context, using an up-to-date alignment of mitochondrial RVT-IM domains. Results confirmed previous findings of multiple origins of annelid, placozoan and sponge RVT-IM domains and provided evidence for common intron donor sources across metazoan phyla. Our results corroborate growing evidence that some metazoans with regenerative abilities (i.e. placozoans, sponges, annelids and bryozoans) are susceptible to intron integration, most likely via horizontal gene transfer.

摘要

动物线粒体基因组通常不含内含子。在这里,我们报告了有史以来从两侧对称动物中记录到的最多数量的线粒体内含子。我们首次从苔藓动物门中鉴定出线粒体内含子。在三个科的四个物种中发现了它们(颚口目)。在 Exechonella vieirai 的完整线粒体基因组中发现了总共 8 个内含子,而在 Parantropora penelope、Discoporella cookae 和 Cupuladria biporosa 的部分线粒体基因组中分别发现了 5、17 和 18 个内含子。在所有物种中都鉴定出内含子编码蛋白结构域逆转录酶和内含子成熟酶(RVT-IM)。E. vieirai 和 P. penelope 的内含子具有保守的 II 组内含子核酶结构域 V 和 VI。D. cookae 和 C. biporosa 的内含子缺乏保守结构域,这阻止了它们的进一步分类。使用线粒体 RVT-IM 结构域的最新比对,在系统发育背景下探索后生动物内含子的起源。结果证实了以前关于环节动物、扁盘动物和海绵 RVT-IM 结构域的多个起源的发现,并为后生动物门的共同内含子供体来源提供了证据。我们的结果证实了越来越多的证据,即一些具有再生能力的后生动物(即扁盘动物、海绵动物、环节动物和苔藓动物)容易发生内含子整合,最有可能是通过水平基因转移。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3cc0/9240083/369077c254cb/41598_2022_14477_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3cc0/9240083/f1221735063a/41598_2022_14477_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3cc0/9240083/435be5c56b97/41598_2022_14477_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3cc0/9240083/67ce1c19e5f2/41598_2022_14477_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3cc0/9240083/cb1e9d29f0a0/41598_2022_14477_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3cc0/9240083/364a29c80db3/41598_2022_14477_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3cc0/9240083/369077c254cb/41598_2022_14477_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3cc0/9240083/f1221735063a/41598_2022_14477_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3cc0/9240083/435be5c56b97/41598_2022_14477_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3cc0/9240083/67ce1c19e5f2/41598_2022_14477_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3cc0/9240083/cb1e9d29f0a0/41598_2022_14477_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3cc0/9240083/364a29c80db3/41598_2022_14477_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3cc0/9240083/369077c254cb/41598_2022_14477_Fig6_HTML.jpg

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