Physical Chemistry I - Biophysical Chemistry, Department of Chemistry and Chemical Biology, TU Dortmund University, Otto-Hahn Street 4a, 44227 Dortmund, Germany.
Department of Chemical Sciences, University of Naples Federico II, Via Cintia 4, 80126 Naples, Italy.
Phys Chem Chem Phys. 2022 Aug 3;24(30):17966-17978. doi: 10.1039/d2cp01769e.
Because organisms living in the deep sea and in the sub-seafloor must be able to cope with hydrostatic pressures up to 1000 bar and more, their biomolecular processes, including ligand-binding reactions, must be adjusted to keep the associated volume changes low in order to function efficiently. Almost all organisms use organic cosolvents (osmolytes) to protect their cells from adverse environmental conditions. They counteract osmotic imbalance, stabilize the structure of proteins and maintain their function. We studied the binding properties of the prototypical ligand proflavine to two serum proteins with different binding pockets, BSA and HSA, in the presence of two prominent osmolytes, trimethylamine--oxide (TMAO) and glycine betaine (GB). TMAO and GB play an important role in the regulation and adaptation of life in deep-sea organisms. To this end, pressure dependent fluorescence spectroscopy was applied, supplemented by circular dichroism (CD) spectroscopy and computer modeling studies. The pressure-dependent measurements were also performed to investigate the intimate nature of the complex formation in relation to hydration and packing changes caused by the presence of the osmolytes. We show that TMAO and GB are able to modulate the ligand binding process in specific ways. Depending on the chemical make-up of the protein's binding pocket and thus the thermodynamic forces driving the binding process, there are osmolytes with specific interaction sites and binding strengths with water that are able to mediate efficient ligand binding even under external stress conditions. In the binding of proflavine to BSA and HSA, the addition of both compatible osmolytes leads to an increase in the binding constant upon pressurization, with TMAO being the most efficient, rendering the binding process also insensitive to pressurization even up to 2 kbar as the volume change remains close to zero. This effect can be corroborated by the effects the cosolvents impose on the strength and dynamics of hydration water as well as on the conformational dynamics of the protein.
由于生活在深海和海底的生物必须能够应对高达 1000 巴及以上的静水压力,它们的生物分子过程,包括配体结合反应,必须进行调整以保持相关的体积变化低,从而高效运作。几乎所有的生物都使用有机共溶剂(渗透剂)来保护细胞免受不利环境条件的影响。它们对抗渗透失衡,稳定蛋白质的结构并保持其功能。我们研究了原型配体吖啶黄素与两种具有不同结合口袋的血清蛋白(BSA 和 HSA)在两种主要渗透剂三甲基氧化胺(TMAO)和甘氨酸甜菜碱(GB)存在下的结合特性。TMAO 和 GB 在深海生物的调节和适应生命中起着重要作用。为此,我们应用了压力依赖荧光光谱法,辅以圆二色性(CD)光谱法和计算机建模研究。还进行了压力依赖测量,以研究在渗透剂存在下由于水合和包装变化引起的复合物形成的内在性质。我们表明,TMAO 和 GB 能够以特定方式调节配体结合过程。根据蛋白质结合口袋的化学组成以及驱动结合过程的热力学力,存在具有特定相互作用位点和与水结合强度的渗透剂,即使在外部压力条件下,也能够介导有效的配体结合。在吖啶黄素与 BSA 和 HSA 的结合中,添加两种相容的渗透剂会导致加压时结合常数增加,其中 TMAO 的效率最高,即使在 2 kbar 下加压,结合过程也不敏感,因为体积变化接近零。这种效应可以通过渗透剂对水的结合强度和动力学以及蛋白质构象动力学的影响来证实。