• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

一个来自深海的新型海洋广古菌门II群的中度嗜热菌起源。

A moderately thermophilic origin of a novel family of marine group II euryarchaeota from deep ocean.

作者信息

Liu Haodong, Liu Wei-Wei, Haro-Moreno Jose M, Xu Bu, Zheng Yanfen, Liu Jiwen, Tian Jiwei, Zhang Xiao-Hua, Zhou Ning-Yi, Qin Liping, Zhu Yuanqing, Rodriguez-Valera Francisco, Zhang Chuanlun

机构信息

Shenzhen Key Laboratory of Marine Archaea Geo-Omics, Department of Ocean Science & Engineering, Southern University of Science and Technology, Shenzhen 518055, China.

Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou), Guangzhou 510000, China.

出版信息

iScience. 2023 Aug 17;26(9):107664. doi: 10.1016/j.isci.2023.107664. eCollection 2023 Sep 15.

DOI:10.1016/j.isci.2023.107664
PMID:37680465
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10480650/
Abstract

Marine group II (MGII) is the most abundant planktonic heterotrophic archaea in the ocean. The evolutionary history of MGII archaea is elusive. In this study, 13 new MGII metagenome-assembled genomes were recovered from surface to the hadal zone in Challenger Deep of the Mariana Trench; four of them from the deep ocean represent a novel group. The optimal growth temperature (OGT) of the common ancestor of MGII has been estimated to be at about 60°C and OGTs of MGIIc, MGIIb, and MGIIa at 47°C-50ºC, 37°C-44ºC, and 30°C-37ºC, respectively, suggesting the adaptation of these species to different temperatures during evolution. The estimated OGT range of MGIIc was supported by experimental measurements of cloned β-galactosidase that showed optimal enzyme activity around 50°C. These results indicate that MGIIc may have originated from a common ancestor that lived in warm or even hot marine environment, such as hydrothermal vents.

摘要

海洋第二类群(MGII)是海洋中数量最多的浮游异养古菌。MGII古菌的进化历史尚不清楚。在本研究中,从马里亚纳海沟挑战者深渊的表层到超深渊带共获得了13个新的MGII宏基因组组装基因组;其中4个来自深海的基因组代表一个新类群。据估计,MGII共同祖先的最适生长温度(OGT)约为60°C,而MGIIc、MGIIb和MGIIa的OGT分别为47°C - 50°C、37°C - 44°C和30°C - 37°C,这表明这些物种在进化过程中适应了不同的温度。对克隆的β - 半乳糖苷酶的实验测量结果支持了MGIIc估计的OGT范围,该结果显示酶活性在50°C左右达到最佳。这些结果表明,MGIIc可能起源于生活在温暖甚至炎热海洋环境(如热液喷口)中的共同祖先。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cb19/10480650/4bf0d7ea7437/gr5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cb19/10480650/6d0020de20d1/fx1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cb19/10480650/076ab35712bf/gr1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cb19/10480650/37161ec4dde1/gr2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cb19/10480650/4aea19a4d3f4/gr3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cb19/10480650/e9f0c18f45f3/gr4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cb19/10480650/4bf0d7ea7437/gr5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cb19/10480650/6d0020de20d1/fx1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cb19/10480650/076ab35712bf/gr1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cb19/10480650/37161ec4dde1/gr2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cb19/10480650/4aea19a4d3f4/gr3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cb19/10480650/e9f0c18f45f3/gr4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cb19/10480650/4bf0d7ea7437/gr5.jpg

相似文献

1
A moderately thermophilic origin of a novel family of marine group II euryarchaeota from deep ocean.一个来自深海的新型海洋广古菌门II群的中度嗜热菌起源。
iScience. 2023 Aug 17;26(9):107664. doi: 10.1016/j.isci.2023.107664. eCollection 2023 Sep 15.
2
Localized high abundance of Marine Group II archaea in the subtropical Pearl River Estuary: implications for their niche adaptation.近海Ⅱ类古菌在亚热带珠江口的本地化高丰度:对其生态位适应的启示。
Environ Microbiol. 2018 Feb;20(2):734-754. doi: 10.1111/1462-2920.14004. Epub 2017 Dec 29.
3
Niche differentiation among annually recurrent coastal Marine Group II Euryarchaeota.年度重现的沿海海洋组 II 广古菌之间的生态位分化。
ISME J. 2019 Dec;13(12):3024-3036. doi: 10.1038/s41396-019-0491-z. Epub 2019 Aug 26.
4
Revealing the full biosphere structure and versatile metabolic functions in the deepest ocean sediment of the Challenger Deep.揭示挑战者深渊最深海洋沉积物中的完整生物圈结构和多样代谢功能。
Genome Biol. 2021 Jul 13;22(1):207. doi: 10.1186/s13059-021-02408-w.
5
A phylogenomic and ecological analysis of the globally abundant Marine Group II archaea (Ca. Poseidoniales ord. nov.).全球丰富的海洋群 II 古菌(Ca. Poseidoniales 目,新目)的系统基因组学和生态学分析。
ISME J. 2019 Mar;13(3):663-675. doi: 10.1038/s41396-018-0282-y. Epub 2018 Oct 15.
6
Genomic ecology of Marine Group II, the most common marine planktonic Archaea across the surface ocean.海洋组 II 的基因组生态学,是海洋表层浮游古菌中最常见的一类。
Microbiologyopen. 2019 Sep;8(9):e00852. doi: 10.1002/mbo3.852. Epub 2019 Jul 2.
7
Metagenomic characterization of a novel non-ammonia-oxidizing Thaumarchaeota from hadal sediment.从深渊沉积物中分离到一种新型的非氨氧化古菌的宏基因组特征。
Microbiome. 2024 Jan 8;12(1):7. doi: 10.1186/s40168-023-01728-2.
8
Spatial variations of microbial communities in abyssal and hadal sediments across the Challenger Deep.跨马里亚纳海沟挑战者深渊的深海和超深渊沉积物中微生物群落的空间变化。
PeerJ. 2019 May 17;7:e6961. doi: 10.7717/peerj.6961. eCollection 2019.
9
Marine Group II Dominates Planktonic Archaea in Water Column of the Northeastern South China Sea.海洋第二类群在南海东北部水柱中的浮游古菌中占主导地位。
Front Microbiol. 2017 Jun 15;8:1098. doi: 10.3389/fmicb.2017.01098. eCollection 2017.
10
Identification of Free-Living and Particle-Associated Microbial Communities Present in Hadal Regions of the Mariana Trench.马里亚纳海沟超深渊区域中自由生活和与颗粒相关的微生物群落的鉴定。
Front Microbiol. 2016 May 9;7:665. doi: 10.3389/fmicb.2016.00665. eCollection 2016.

本文引用的文献

1
Deep sea osmolytes in action: their effect on protein-ligand binding under high pressure stress.深海渗透物的作用机制:高压胁迫下对蛋白-配体结合的影响。
Phys Chem Chem Phys. 2022 Aug 3;24(30):17966-17978. doi: 10.1039/d2cp01769e.
2
Phylogenetic Signal, Congruence, and Uncertainty across Bacteria and Archaea.细菌和古菌的系统发育信号、一致性和不确定性。
Mol Biol Evol. 2021 Dec 9;38(12):5514-5527. doi: 10.1093/molbev/msab254.
3
Deep ocean metagenomes provide insight into the metabolic architecture of bathypelagic microbial communities.
深海宏基因组为研究深海微生物群落的代谢结构提供了新视角。
Commun Biol. 2021 May 21;4(1):604. doi: 10.1038/s42003-021-02112-2.
4
The Evolution Pathway of Ammonia-Oxidizing Archaea Shaped by Major Geological Events.主要地质事件塑造的氨氧化古菌的进化途径。
Mol Biol Evol. 2021 Aug 23;38(9):3637-3648. doi: 10.1093/molbev/msab129.
5
Oxidation of trimethylamine to trimethylamine -oxide facilitates high hydrostatic pressure tolerance in a generalist bacterial lineage.三甲基胺氧化为三甲基胺氧化物有助于一个广适性细菌谱系的高压耐受性。
Sci Adv. 2021 Mar 26;7(13). doi: 10.1126/sciadv.abf9941. Print 2021 Mar.
6
Ancestral Reconstructions Decipher Major Adaptations of Ammonia-Oxidizing Archaea upon Radiation into Moderate Terrestrial and Marine Environments.祖先重建揭示了氨氧化古菌在辐射到中等陆地和海洋环境时的主要适应机制。
mBio. 2020 Oct 13;11(5):e02371-20. doi: 10.1128/mBio.02371-20.
7
Novel insights into the Thaumarchaeota in the deepest oceans: their metabolism and potential adaptation mechanisms.对深海中的泉古菌的新认识:它们的新陈代谢和潜在的适应机制。
Microbiome. 2020 Jun 1;8(1):78. doi: 10.1186/s40168-020-00849-2.
8
GTDB-Tk: a toolkit to classify genomes with the Genome Taxonomy Database.GTDB-Tk:一个使用基因组分类数据库对基因组进行分类的工具包。
Bioinformatics. 2019 Nov 15;36(6):1925-7. doi: 10.1093/bioinformatics/btz848.
9
Niche differentiation among annually recurrent coastal Marine Group II Euryarchaeota.年度重现的沿海海洋组 II 广古菌之间的生态位分化。
ISME J. 2019 Dec;13(12):3024-3036. doi: 10.1038/s41396-019-0491-z. Epub 2019 Aug 26.
10
A CUGGU/UUGGU-specific MazF homologue from Methanohalobium evestigatum.来源于产甲烷异常球菌 M evestigatum 的 CUGGU/UUGGU 特异性 MazF 同源物。
Biochem Biophys Res Commun. 2019 Oct 20;518(3):533-540. doi: 10.1016/j.bbrc.2019.08.076. Epub 2019 Aug 21.