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化学计量学模型对不同芳香族化合物对日本林蛙急性毒性的预测

Chemometric modeling of acute toxicity of diverse aromatic compounds against Rana japonica.

机构信息

Drug Theoretics and Cheminformatics Laboratory, Department of Pharmaceutical Technology, Jadavpur University, Kolkata 700032, India.

Drug Theoretics and Cheminformatics Laboratory, Department of Pharmaceutical Technology, Jadavpur University, Kolkata 700032, India.

出版信息

Toxicol In Vitro. 2022 Sep;83:105427. doi: 10.1016/j.tiv.2022.105427. Epub 2022 Jun 28.

Abstract

Chemicals used in our daily life show different toxic effects to the aquatic and terrestrial species and thus hamper the ecological balance. In the present time, amphibians are one of them, which are threatened to be extinct. Quantitative structure-activity relationship (QSAR) is an useful tool for prediction involving less time, money and manpower without requiring any animal experiments to assess the unavailable acute toxicity data for the untested molecules. In this study, we have developed QSAR models for ecotoxicity of some waterborne diverse aromatic compounds on an amphibian species Rana japonica (Japanese brown frog) employing Genetic Algorithm (GA) for variable selection followed by Partial Least Squares (PLS) regression method following recommendations of the Organization for Economic Co-operation and Development (OECD) for QSAR model development. Double cross-validation (DCV) followed by Best Subset Selection (BSS) were employed to select suitable models. The models displayed promising statistical quality in terms of R (= 0.837-0.841), Q (= 0.782-0.787), R or Q (= 0.802-0.82) and some other internal and external validation metrics for tadpoles of Rana japonica (N = 44, N = 14). These models can be applied for data gap filling for a new untested compound falling within the applicability domain (AD) of the models.

摘要

在日常生活中使用的化学物质对水生和陆生物种表现出不同的毒性作用,从而破坏了生态平衡。在当前,两栖动物就是其中之一,它们面临灭绝的威胁。定量构效关系(QSAR)是一种有用的预测工具,它涉及较少的时间、金钱和人力,而无需进行任何动物实验来评估未测试分子的不可用急性毒性数据。在这项研究中,我们采用遗传算法(GA)进行变量选择,然后采用偏最小二乘法(PLS)回归方法,根据经济合作与发展组织(OECD)的 QSAR 模型开发建议,为一些水基芳香族化合物对两栖动物日本林蛙(Japanese brown frog)的生态毒性开发了 QSAR 模型。采用双交叉验证(DCV)和最佳子集选择(BSS)来选择合适的模型。这些模型在基于日本林蛙蝌蚪的 R(= 0.837-0.841)、Q(= 0.782-0.787)、R 或 Q(= 0.802-0.82)以及其他一些内部和外部验证指标方面显示了良好的统计质量(N = 44,N = 14)。这些模型可用于填补模型适用范围内(AD)新的未经测试化合物的数据空白。

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