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游离黄素的分子性质和互变异构平衡。

Molecular properties and tautomeric equilibria of isolated flavins.

机构信息

Department of Biochemistry, Instituto de Química, Universidade de São Paulo, São Paulo, SP, Brazil.

出版信息

J Comput Chem. 2022 Sep 5;43(23):1561-1572. doi: 10.1002/jcc.26957. Epub 2022 Jul 1.

Abstract

Flavins are employed as redox cofactors and chromophores in a plethora of flavoenzymes. Their versatility is an outcome of intrinsic molecular properties of the isoalloxazine ring modulated by the protein scaffold and surrounding solvent. Thus, an investigation of isolated flavins with high-level electronic-structure methods and with error assessment of the calculated properties will contribute to building better models of flavin reactivity. Here, we benchmarked ground-state properties such as electron affinity, gas-phase basicity, dipole moment, torsion energy, and tautomer stability for lumiflavins in all biologically relevant oxidation and charge states. Overall, multiconfigurational effects are small and chemical accuracy is achieved by coupled-cluster treatments of energetic properties. Augmented basis sets and extrapolations to the complete basis-set limit are necessary for consistent agreement with experimental energetics. Among DFT functionals tested, M06-2X shows the best performance for most properties, except gas-phase basicity, in which M06 and CAM-B3LYP perform better. Moreover, dipole moments of radical flavins show large deviations for all functionals studied. Tautomers with noncanonical protonation states are significantly populated at normal temperatures, adding to the complexity of modeling flavins. These results will guide future computational studies of flavoproteins and flavin chemistry by indicating the limitations of electronic-structure methodologies and the contributions of multiple tautomeric states.

摘要

黄素作为氧化还原辅助因子和发色团存在于大量黄素酶中。它们的多功能性是异咯嗪环的固有分子特性与蛋白质支架和周围溶剂共同作用的结果。因此,使用高精度的电子结构方法对分离的黄素进行研究,并对计算性质进行误差评估,将有助于构建更好的黄素反应性模型。在这里,我们对生物相关的所有氧化态和电荷态的光黄素的电子亲合势、气相碱性、偶极矩、扭转能和互变异构体稳定性等基态性质进行了基准测试。总的来说,通过对能量性质进行耦合簇处理,可以达到小的多组态效应和化学精度。对于一致的实验能量学,需要扩展基组和外推到完全基组极限。在所测试的 DFT 泛函中,M06-2X 对大多数性质(除气相碱性外)表现出最好的性能,而 M06 和 CAM-B3LYP 的性能更好。此外,所有研究的泛函对自由基黄素的偶极矩都显示出较大的偏差。在正常温度下,具有非经典质子化状态的互变异构体大量存在,这增加了黄素建模的复杂性。这些结果将通过指示电子结构方法的局限性和多个互变异构体状态的贡献,为黄素蛋白和黄素化学的未来计算研究提供指导。

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