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单分子实时测序揭示了具有药用价值的候选基因和途径。

SMRT Sequencing Reveals Candidate Genes and Pathways With Medicinal Value in .

作者信息

Zhou Kangqi, Chen Zhong, Du Xuesong, Huang Yin, Qin Junqi, Wen Luting, Pan Xianhui, Lin Yong

机构信息

Guangxi Key Laboratory for Aquatic Genetic Breeding and Healthy Aquaculture, Guangxi Academy of Fishery Sciences, Nanning, China.

出版信息

Front Genet. 2022 Jun 16;13:881952. doi: 10.3389/fgene.2022.881952. eCollection 2022.

Abstract

is an economically important aquatic snail with high medicinal value. However, molecular biology research on is limited by the lack of a reference genome, so the analysis of its transcripts is an important step to study the regulatory genes of various substances in . Herein, we conducted the first full-length transcriptome analysis of using PacBio single-molecule real-time (SMRT) sequencing technology. We identified a total of 26,312 unigenes with an average length of 2,572 bp, of which the largest number of zf-c2h2 transcription factor families (120,18.24%) were found, and also observed that the majority of the 8,058 SSRs contained 4-7 repeat units, which provided data for subsequent work on snail genetics Subsequently, 91.86% (24,169) of the genes were successfully annotated to the four major databases, while the highest homology was observed with . Functional annotation revealed that the majority of transcripts were enriched in metabolism, signal transduction and Immune-related pathways, and several candidate genes involved in drug metabolism and immune response were identified (e.g., CYP1A1, CYP2J, CYP2U1, GST, ,PIK3, PDE3A, PRKAG). This study lays a foundation for future molecular biology research and provides a reference for studying genes associated with the medicinal value of .

摘要

是一种具有重要经济价值且药用价值高的水生蜗牛。然而,由于缺乏参考基因组,对其分子生物学研究受到限制,因此对其转录本的分析是研究该蜗牛体内各种物质调控基因的重要一步。在此,我们利用PacBio单分子实时(SMRT)测序技术首次对该蜗牛进行了全长转录组分析。我们共鉴定出26312个单基因,平均长度为2572 bp,其中发现zf-c2h2转录因子家族数量最多(120个,占18.24%),还观察到8058个简单序列重复(SSR)中的大多数包含4 - 7个重复单元,这为后续蜗牛遗传学研究提供了数据。随后,91.86%(24169个)的基因成功注释到四个主要数据库,其中与[具体物种或数据库名称未给出]的同源性最高。功能注释表明,大多数转录本富集于代谢、信号转导和免疫相关途径,并鉴定出了几个参与药物代谢和免疫反应的候选基因(如CYP1A1、CYP2J、CYP2U1、谷胱甘肽S - 转移酶(GST)、[具体基因未给出]、PIK3、PDE3A、PRKAG)。本研究为未来的分子生物学研究奠定了基础,并为研究与该蜗牛药用价值相关的基因提供了参考。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1686/9243326/148fadf57d4b/fgene-13-881952-g001.jpg

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