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芋螺科线粒体基因组特征及新腹足目系统发育分析

Characterization of Mitochondrial Genome of Family Turridae and Phylogenetic Considerations within the Neogastropoda.

作者信息

Jiang Xinqin, Miao Jing, Li Jiji, Ye Yingying

机构信息

National Engineering Research Center for Marine Aquaculture, Zhejiang Ocean University, Zhoushan 316022, China.

College of Fisheries, Zhejiang Ocean University, Zhoushan 316022, China.

出版信息

Animals (Basel). 2024 Jan 7;14(2):192. doi: 10.3390/ani14020192.

Abstract

Neogastropoda is a group of marine organisms with an extremely wide distribution that is rich in species and economic and ornamental values, the classification of species in this order has been ongoing for a long time, but there is still a great controversy about whether this order is monophyletic. In this study, we obtained the complete mitogenome of by next-generation sequencing and analyzed the basic structural features of the genome, and we found that the number of genes was consistent with that of most of the Neogastropoda snails, containing 37 genes, including 13 protein-coding genes (PCGs), 2 rRNAs, and 22 tRNAs. Analyzing base content, amino acid content, codon usage preference, and tRNA structure, the mitogenomes of eight species of Turridae were selected for analysis of selection pressures, and it was found that the evolution of species in this family was affected by purifying selection. In addition, by analyzing the rearrangement characteristics, it was found that the sequence of was consistent with the Conoidea consensus order, and four of the eight species involved in the analysis showed rearrangements. Finally, we constructed a phylogenetic tree by combining PCGs of 60 species within Caenogastropoda and found Neogastropoda to be a monophyletic group, validating the results of morphological classification. The results will provide more references for the classification and species evolution of Neogastropoda, as well as phylogenetic analysis.

摘要

新腹足目是一类海洋生物,分布极为广泛,物种丰富,具有经济和观赏价值。该目物种的分类工作已经进行了很长时间,但关于这个目是否为单系类群仍存在很大争议。在本研究中,我们通过下一代测序获得了[具体物种]的完整线粒体基因组,并分析了基因组的基本结构特征,发现基因数量与大多数新腹足目蜗牛一致,包含37个基因,其中包括13个蛋白质编码基因(PCGs)、2个rRNA和22个tRNA。通过分析碱基含量、氨基酸含量、密码子使用偏好和tRNA结构,选择了8种塔螺科物种的线粒体基因组进行选择压力分析,发现该科物种的进化受到纯化选择的影响。此外,通过分析重排特征,发现[具体物种]的序列与芋螺总科的一致顺序相符,分析中涉及的8个物种中有4个显示出重排。最后,我们结合新腹足亚纲60个物种的PCGs构建了系统发育树,发现新腹足目是一个单系类群,验证了形态分类的结果。这些结果将为新腹足目的分类和物种进化以及系统发育分析提供更多参考。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/37b8/11326093/fb630a374a8f/animals-14-00192-g001.jpg

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