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网络生物学方法揭示 circRNA 与术后认知功能障碍发病机制中分子信号通路相关的治疗靶点。

Network Biology Approaches to Uncover Therapeutic Targets Associated with Molecular Signaling Pathways from circRNA in Postoperative Cognitive Dysfunction Pathogenesis.

机构信息

Department of Anesthesiology, The First Affiliated Hospital of Nanjing Medical University, Nanjing, 210029, Jiangsu, People's Republic of China.

Department of Computer Science and Engineering, International Islamic University Chittagong, Chittagong, Bangladesh.

出版信息

J Mol Neurosci. 2022 Sep;72(9):1875-1901. doi: 10.1007/s12031-022-02042-6. Epub 2022 Jul 6.

Abstract

Postoperative cognitive dysfunction (POCD) is a cognitive deterioration and dementia that arise after a surgical procedure, affecting up to 40% of surgery patients over the age of 60. The precise etiology and molecular mechanisms underlying POCD remain uncovered. These reasons led us to employ integrative bioinformatics and machine learning methodologies to identify several biological signaling pathways involved and molecular signatures to better understand the pathophysiology of POCD. A total of 223 differentially expressed genes (DEGs) comprising 156 upregulated and 67 downregulated genes were identified from the circRNA microarray dataset by comparing POCD and non-POCD samples. Gene ontology (GO) analyses of DEGs were significantly involved in neurogenesis, autophagy regulation, translation in the postsynapse, modulating synaptic transmission, regulation of the cellular catabolic process, macromolecule modification, and chromatin remodeling. Pathway enrichment analysis indicated some key molecular pathways, including mTOR signaling pathway, AKT phosphorylation of cytosolic targets, MAPK and NF-κB signaling pathway, PI3K/AKT signaling pathway, nitric oxide signaling pathway, chaperones that modulate interferon signaling pathway, apoptosis signaling pathway, VEGF signaling pathway, cellular senescence, RANKL/RARK signaling pathway, and AGE/RAGE pathway. Furthermore, seven hub genes were identified from the PPI network and also determined transcription factors and protein kinases. Finally, we identified a new predictive drug for the treatment of SCZ using the LINCS L1000, GCP, and P100 databases. Together, our results bring a new era of the pathogenesis of a deeper understanding of POCD, identified novel therapeutic targets, and predicted drug inhibitors in POCD.

摘要

术后认知功能障碍(POCD)是一种手术后出现的认知恶化和痴呆,影响多达 40%的 60 岁以上手术患者。POCD 的精确病因和分子机制仍未被揭示。这些原因促使我们采用整合生物信息学和机器学习方法来识别涉及的几个生物学信号通路和分子特征,以更好地理解 POCD 的病理生理学。通过比较 POCD 和非 POCD 样本,从 circRNA 微阵列数据集中总共鉴定出 223 个差异表达基因(DEG),包括 156 个上调基因和 67 个下调基因。DEG 的基因本体(GO)分析显著涉及神经发生、自噬调节、突触后翻译、调节突触传递、细胞分解代谢过程调节、大分子修饰和染色质重塑。途径富集分析表明了一些关键的分子途径,包括 mTOR 信号通路、细胞质靶标 AKT 磷酸化、MAPK 和 NF-κB 信号通路、PI3K/AKT 信号通路、一氧化氮信号通路、调节干扰素信号通路的伴侣、细胞凋亡信号通路、VEGF 信号通路、细胞衰老、RANKL/RARK 信号通路和 AGE/RAGE 通路。此外,从 PPI 网络中还鉴定出了七个枢纽基因,并确定了转录因子和蛋白激酶。最后,我们使用 LINCS L1000、GCP 和 P100 数据库,鉴定出了一种用于治疗 SCZ 的新预测药物。总之,我们的研究结果为 POCD 的发病机制带来了一个新的时代,鉴定了新的治疗靶点,并预测了 POCD 中的药物抑制剂。

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