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基因表达分析揭示了人类外周血单个核细胞中年轻人和老年人之间的年龄和种族特征。

Gene Expression Analysis Reveals Age and Ethnicity Signatures Between Young and Old Adults in Human PBMC.

作者信息

Hu Yang, Xu Yudai, Mao Lipeng, Lei Wen, Xiang Jian, Gao Lijuan, Jiang Junxing, Huang Li An, Luo Oscar Junhong, Duan Jinhai, Chen Guobing

机构信息

Institute of Geriatric Immunology, Department of Microbiology and Immunology, School of Medicine, Jinan University, Guangzhou, China.

NHC Key Laboratory of Male Reproduction and Genetics, Guangdong Provincial Reproductive Science Institute, Guangdong Provincial Fertility Hospital, Guangzhou, China.

出版信息

Front Aging. 2022 Feb 3;2:797040. doi: 10.3389/fragi.2021.797040. eCollection 2021.

Abstract

Human immune system functions over an entire lifetime, yet how and why the immune system becomes less effective with age are not well understood. Here, we characterize peripheral blood mononuclear cell transcriptome from 132 healthy adults with 21-90 years of age using the weighted gene correlation network analyses. In our study, 113 Caucasian from the 10KIP database and RNA-seq data of 19 Asian (Chinese) are used to explore the differential co-expression genes in PBMC aging. These two dataset reveal a set of insightful gene expression modules and representative gene biomarkers for human immune system aging from Asian and Caucasian ancestry, respectively. Among them, the aging-specific modules may show an age-related gene expression variation spike around early-seventies. In addition, we find the top hub genes including NUDT7, CLPB, OXNAD1, and MLLT3 are shared between Asian and Caucasian aging related modules and further validated in human PBMCs from different age groups. Overall, the impact of age and race on transcriptional variation elucidated from this study may provide insights into the transcriptional driver of immune aging.

摘要

人类免疫系统在整个生命周期中发挥作用,但免疫系统如何以及为何随着年龄增长而变得效率低下,目前尚不清楚。在这里,我们使用加权基因共表达网络分析,对132名年龄在21至90岁之间的健康成年人的外周血单个核细胞转录组进行了表征。在我们的研究中,使用了来自10KIP数据库的113名白种人和19名亚洲人(中国人)的RNA测序数据,以探索外周血单个核细胞衰老中的差异共表达基因。这两个数据集分别揭示了一组来自亚洲和白种人血统的、关于人类免疫系统衰老的有深刻见解的基因表达模块和代表性基因生物标志物。其中,衰老特异性模块可能在七十岁出头时出现与年龄相关的基因表达变异峰值。此外,我们发现包括NUDT7、CLPB、OXNAD1和MLLT3在内的顶级中心基因在亚洲和白种人衰老相关模块中是共享的,并在来自不同年龄组的人类外周血单个核细胞中得到了进一步验证。总体而言,本研究阐明的年龄和种族对转录变异的影响,可能为免疫衰老的转录驱动因素提供见解。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/016f/9261324/39033112dd5c/fragi-02-797040-g001.jpg

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