Editorial: Influence of Protein-Protein Interactions (PPIs) on the Outcome of Viral Infections.
作者信息
Jangra Rohit K, Llabrés Mercè, Guardado-Calvo Pablo, Mittler Eva, Lasso Gorka
机构信息
Department of Microbiology and Immunology, Louisiana State University Health Sciences Center-Shreveport, Shreveport, LA, United States.
Department of Mathematics and Computer Science, University of the Balearic Islands, Palma, Spain.
出版信息
Front Microbiol. 2022 Jun 27;13:943379. doi: 10.3389/fmicb.2022.943379. eCollection 2022.
Abstract
摘要
相似文献
1
Editorial: Influence of Protein-Protein Interactions (PPIs) on the Outcome of Viral Infections.
Front Microbiol. 2022 Jun 27;13:943379. doi: 10.3389/fmicb.2022.943379. eCollection 2022.
2
HVIDB: a comprehensive database for human-virus protein-protein interactions.
Brief Bioinform. 2021 Mar 22;22(2):832-844. doi: 10.1093/bib/bbaa425.
3
Current status and future perspectives of computational studies on human-virus protein-protein interactions.
Brief Bioinform. 2021 Sep 2;22(5). doi: 10.1093/bib/bbab029.
4
A generalized approach to predicting protein-protein interactions between virus and host.
BMC Genomics. 2018 Aug 13;19(Suppl 6):568. doi: 10.1186/s12864-018-4924-2.
5
Structural models for host-pathogen protein-protein interactions: assessing coverage and bias.
Pac Symp Biocomput. 2012:287-98.
6
Uncovering New Pathogen-Host Protein-Protein Interactions by Pairwise Structure Similarity.
PLoS One. 2016 Jan 22;11(1):e0147612. doi: 10.1371/journal.pone.0147612. eCollection 2016.
7
Understanding Human-Virus Protein-Protein Interactions Using a Human Protein Complex-Based Analysis Framework.
mSystems. 2019 Apr 9;4(2). doi: 10.1128/mSystems.00303-18. eCollection 2019 Mar-Apr.
8
Reconstructing genome-wide protein-protein interaction networks using multiple strategies with homologous mapping.
PLoS One. 2015 Jan 20;10(1):e0116347. doi: 10.1371/journal.pone.0116347. eCollection 2015.
9
Network-Guided Discovery of Influenza Virus Replication Host Factors.
mBio. 2018 Dec 18;9(6):e02002-18. doi: 10.1128/mBio.02002-18.
10
ChikvInt: a Chikungunya virus-host protein-protein interaction database.
Lett Appl Microbiol. 2022 Jun;74(6):992-1000. doi: 10.1111/lam.13677. Epub 2022 Mar 11.
引用本文的文献
1
Bioinformatics Goes Viral: I. Databases, Phylogenetics and Phylodynamics Tools for Boosting Virus Research.
Viruses. 2024 Sep 6;16(9):1425. doi: 10.3390/v16091425.
2
Machine Learning Methods for Virus-Host Protein-Protein Interaction Prediction.
Methods Mol Biol. 2023;2690:401-417. doi: 10.1007/978-1-0716-3327-4_31.
本文引用的文献
1
Climate change increases cross-species viral transmission risk.
Nature. 2022 Jul;607(7919):555-562. doi: 10.1038/s41586-022-04788-w. Epub 2022 Apr 28.
2
AF2Complex predicts direct physical interactions in multimeric proteins with deep learning.
Nat Commun. 2022 Apr 1;13(1):1744. doi: 10.1038/s41467-022-29394-2.
3
Improved prediction of protein-protein interactions using AlphaFold2.
Nat Commun. 2022 Mar 10;13(1):1265. doi: 10.1038/s41467-022-28865-w.
4
Critical assessment of methods of protein structure prediction (CASP)-Round XIV.
Proteins. 2021 Dec;89(12):1607-1617. doi: 10.1002/prot.26237. Epub 2021 Oct 7.
5
Accurate prediction of protein structures and interactions using a three-track neural network.
Science. 2021 Aug 20;373(6557):871-876. doi: 10.1126/science.abj8754. Epub 2021 Jul 15.
6
Highly accurate protein structure prediction with AlphaFold.
Nature. 2021 Aug;596(7873):583-589. doi: 10.1038/s41586-021-03819-2. Epub 2021 Jul 15.
7
Ecosystem perspectives are needed to manage zoonotic risks in a changing climate.
BMJ. 2020 Nov 13;371:m3389. doi: 10.1136/bmj.m3389.
8
Rigorous wildlife disease surveillance.
Science. 2020 Jul 10;369(6500):145-147. doi: 10.1126/science.abc0017.
9
Global shifts in mammalian population trends reveal key predictors of virus spillover risk.
Proc Biol Sci. 2020 Apr 8;287(1924):20192736. doi: 10.1098/rspb.2019.2736.
10
Improved protein structure prediction using predicted interresidue orientations.
Proc Natl Acad Sci U S A. 2020 Jan 21;117(3):1496-1503. doi: 10.1073/pnas.1914677117. Epub 2020 Jan 2.
Zotero 插件