• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

通过使用不同方案的广泛从头算模拟,准确获得水的过量质子和氢氧根的扩散系数。

Accurate diffusion coefficients of the excess proton and hydroxide in water via extensive ab initio simulations with different schemes.

机构信息

CIC nanoGUNE BRTA, Tolosa Hiribidea 76, 20018 San Sebastián, Spain and Instituto de Fusión Nuclear "Guillermo Velarde," Universidad Politécnica de Madrid, C/ José Gutiérrez Abascal 2, 28006 Madrid, Spain.

出版信息

J Chem Phys. 2022 Jul 14;157(2):024504. doi: 10.1063/5.0093958.

DOI:10.1063/5.0093958
PMID:35840376
Abstract

Despite its simple molecular formula, obtaining an accurate in silico description of water is far from straightforward. Many of its very peculiar properties are quite elusive, and in particular, obtaining good estimations of the diffusion coefficients of the solvated proton and hydroxide at a reasonable computational cost has been an unsolved challenge until now. Here, I present extensive results of several unusually long ab initio molecular dynamics (MD) simulations employing different combinations of the Born-Oppenheimer and second-generation Car-Parrinello MD propagation methods with different ensembles (NVE and NVT) and thermostats, which show that these methods together with the RPBE-D3 functional provide a very accurate estimation of the diffusion coefficients of the solvated HO and OH ions, together with an extremely accurate description of several properties of neutral water (such as the structure of the liquid and its diffusion and shear viscosity coefficients). In addition, I show that the estimations of D and D depend dramatically on the simulation length, being necessary to reach timescales in the order of hundreds of picoseconds to obtain reliable results.

摘要

尽管其分子式简单,但要准确地进行计算机模拟描述远非易事。水的许多非常特殊的性质都难以捉摸,特别是在合理的计算成本下,获得溶剂化质子和氢氧根扩散系数的良好估计值一直是一个未解决的挑战。在这里,我展示了几项异常长的从头算分子动力学 (MD) 模拟的广泛结果,这些模拟使用了 Born-Oppenheimer 和第二代 Car-Parrinello MD 传播方法的不同组合,以及不同的系综(NVE 和 NVT)和恒温器,结果表明,这些方法与 RPBE-D3 泛函一起提供了对溶剂化 HO 和 OH 离子扩散系数的非常准确的估计,以及对中性水的几个性质(如液体的结构及其扩散和剪切粘度系数)的极其准确的描述。此外,我还表明,D 和 D 的估计值极大地取决于模拟长度,需要达到数百皮秒量级的时间尺度才能获得可靠的结果。

相似文献

1
Accurate diffusion coefficients of the excess proton and hydroxide in water via extensive ab initio simulations with different schemes.通过使用不同方案的广泛从头算模拟,准确获得水的过量质子和氢氧根的扩散系数。
J Chem Phys. 2022 Jul 14;157(2):024504. doi: 10.1063/5.0093958.
2
Structural and dynamic properties of solvated hydroxide and hydronium ions in water from ab initio modeling.溶剂化氢氧根离子和水合氢离子在水中的结构和动力学性质:从头建模。
J Chem Phys. 2022 Jul 14;157(2):024503. doi: 10.1063/5.0094944.
3
Proton transfer and the mobilities of the H+ and OH- ions from studies of a dissociating model for water.质子转移和 H+及 OH-离子的迁移率来自对水的离解模型的研究。
J Chem Phys. 2011 Sep 28;135(12):124505. doi: 10.1063/1.3632990.
4
Grotthuss Molecular Dynamics Simulations for Modeling Proton Hopping in Electrosprayed Water Droplets.用于模拟电喷雾水滴中质子跳跃的 Grotthuss 分子动力学模拟。
J Chem Theory Comput. 2022 Jun 14;18(6):3781-3794. doi: 10.1021/acs.jctc.2c00001. Epub 2022 May 11.
5
A first principles molecular dynamics study of the solvation structure and migration kinetics of an excess proton and a hydroxide ion in binary water-ammonia mixtures.第一原理分子动力学研究过剩质子和氢氧根离子在二元水-氨混合物中的溶剂化结构和迁移动力学。
J Chem Phys. 2012 Mar 21;136(11):114509. doi: 10.1063/1.3691602.
6
Proton transfer through hydrogen bonds in two-dimensional water layers: a theoretical study based on ab initio and quantum-classical simulations.二维水层中通过氢键的质子转移:基于从头算和量子经典模拟的理论研究
J Chem Phys. 2015 Jan 28;142(4):044701. doi: 10.1063/1.4905495.
7
Developing machine-learned potentials to simultaneously capture the dynamics of excess protons and hydroxide ions in classical and path integral simulations.开发机器学习势能,以便在经典模拟和路径积分模拟中同时捕捉过量质子和氢氧根离子的动力学。
J Chem Phys. 2023 Aug 21;159(7). doi: 10.1063/5.0162066.
8
Hydroxide ion can move faster than an excess proton through one-dimensional water chains in hydrophobic narrow pores.氢氧根离子可以比过剩的质子更快地通过疏水窄孔中的一维水分子链。
J Phys Chem B. 2012 Aug 16;116(32):9744-57. doi: 10.1021/jp301466e. Epub 2012 Aug 7.
9
On the recombination of hydronium and hydroxide ions in water.在水合氢离子和氢氧根离子的重组。
Proc Natl Acad Sci U S A. 2011 Dec 20;108(51):20410-5. doi: 10.1073/pnas.1112486108. Epub 2011 Dec 5.
10
The self-consistent charge density functional tight binding method applied to liquid water and the hydrated excess proton: benchmark simulations.自洽电荷密度泛函紧束缚方法在液态水中及水合过量质子的应用:基准模拟。
J Phys Chem B. 2010 May 27;114(20):6922-31. doi: 10.1021/jp1010555.

引用本文的文献

1
From Grotthuss Transfer to Conductivity: Machine Learning Molecular Dynamics of Aqueous KOH.从格罗特斯传递到电导率:氢氧化钾水溶液的机器学习分子动力学
J Phys Chem B. 2025 Jun 19;129(24):6093-6099. doi: 10.1021/acs.jpcb.5c03199. Epub 2025 Jun 9.