Center for Personal Dynamic Regulomes, Stanford University, Stanford, CA, USA.
Department of Ophthalmology, Stanford University School of Medicine, Stanford, CA, USA.
Nat Biotechnol. 2023 Feb;41(2):262-272. doi: 10.1038/s41587-022-01393-0. Epub 2022 Jul 18.
Circular RNAs (circRNAs) are stable and prevalent RNAs in eukaryotic cells that arise from back-splicing. Synthetic circRNAs and some endogenous circRNAs can encode proteins, raising the promise of circRNA as a platform for gene expression. In this study, we developed a systematic approach for rapid assembly and testing of features that affect protein production from synthetic circRNAs. To maximize circRNA translation, we optimized five elements: vector topology, 5' and 3' untranslated regions, internal ribosome entry sites and synthetic aptamers recruiting translation initiation machinery. Together, these design principles improve circRNA protein yields by several hundred-fold, provide increased translation over messenger RNA in vitro, provide more durable translation in vivo and are generalizable across multiple transgenes.
环状 RNA(circRNAs)是真核细胞中稳定且普遍存在的 RNA,它们来源于反向剪接。合成的 circRNAs 和一些内源性 circRNAs 可以编码蛋白质,这为 circRNA 作为基因表达的平台提供了可能。在这项研究中,我们开发了一种系统的方法,用于快速组装和测试影响合成 circRNAs 蛋白产生的特征。为了最大限度地提高 circRNA 的翻译效率,我们优化了五个要素:载体拓扑结构、5' 和 3' 非翻译区、内部核糖体进入位点和招募翻译起始机制的合成适体。这些设计原则共同将 circRNA 蛋白产量提高了数百倍,在体外比信使 RNA 具有更高的翻译效率,在体内提供更持久的翻译,并可推广到多个转基因。