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血管滤波器多区域分析的基准框架。

A Benchmark Framework for Multiregion Analysis of Vesselness Filters.

出版信息

IEEE Trans Med Imaging. 2022 Dec;41(12):3649-3662. doi: 10.1109/TMI.2022.3192679. Epub 2022 Dec 2.

DOI:10.1109/TMI.2022.3192679
PMID:35857732
Abstract

Vessel enhancement (aka vesselness) filters, are part of angiographic image processing for more than twenty years. Their popularity comes from their ability to enhance tubular structures while filtering out other structures, especially as a preliminary step of vessel segmentation. Choosing the right vesselness filter among the many available can be difficult, and their parametrization requires an accurate understanding of their underlying concepts and a genuine expertise. In particular, using default parameters is often not enough to reach satisfactory results on specific data. Currently, only few benchmarks are available to help the users choosing the best filter and its parameters for a given application. In this article, we present a generic framework to compare vesselness filters. We use this framework to compare seven gold standard filters. Our experiments are performed on three public datasets: the hepatic Ircad dataset (CT images), the Bullit dataset (brain MRA images) and the synthetic VascuSynth dataset. We analyse the results of these seven filters both quantitatively and qualitatively. In particular, we assess their performances in key areas: the organ of interest, the whole vascular network neighbourhood and the vessel neighbourhood split into several classes, based on their diameters. We also focus on the vessels bifurcations, which are often missed by vesselness filters. We provide the code of the benchmark, which includes up-to-date C++ implementations of the seven filters, as well as the experimental setup (parameter optimization, result analysis, etc.). An online demonstrator is also provided to help the community apply and visually compare these vesselness filters.

摘要

血管增强(又名血管性)滤波器是血管造影图像处理二十多年来的一部分。它们之所以受欢迎,是因为它们能够增强管状结构,同时过滤掉其他结构,特别是作为血管分割的初步步骤。在众多可用的血管性滤波器中选择合适的滤波器可能很困难,并且它们的参数化需要对其底层概念有准确的理解和真正的专业知识。特别是,使用默认参数通常不足以在特定数据上获得满意的结果。目前,只有少数基准可用,以帮助用户为给定的应用选择最佳的滤波器及其参数。在本文中,我们提出了一个通用的框架来比较血管性滤波器。我们使用这个框架来比较七种黄金标准滤波器。我们的实验是在三个公共数据集上进行的:Ircad 肝脏数据集(CT 图像)、Bullit 数据集(脑 MRA 图像)和合成的 VascuSynth 数据集。我们从定量和定性两个方面分析了这七种滤波器的结果。特别是,我们评估了它们在关键领域的性能:感兴趣的器官、整个血管网络的邻近区域以及根据直径分为几个类别的血管邻近区域。我们还关注血管分支,这通常是血管性滤波器所忽略的。我们提供了基准的代码,其中包括七种滤波器的最新 C++实现,以及实验设置(参数优化、结果分析等)。我们还提供了一个在线演示,以帮助社区应用和直观地比较这些血管性滤波器。

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