College of Life Science and Technology, Beijing University of Chemical Technologygrid.48166.3d, Beijing, China.
Department of Virology, Beijing Institute of Microbiology and Epidemiology, Beijing, China.
Microbiol Spectr. 2022 Aug 31;10(4):e0048522. doi: 10.1128/spectrum.00485-22. Epub 2022 Jul 18.
The long terminal repeats (LTRs) of human endogenous retroviruses (HERVs) are distributed throughout the human genome and provide favorable conditions to regulate the expression of their adjacent genes. HML-2 is the most biologically active subgroup of the HERV-K family, and expression of its members has been associated with many cancer types. The LTRs of HML-2 have been classified into three subgroups (LTR5A, LTR5B, and LTR5Hs) based on phylogenetic analyses. The current study aimed to explore the LTR transcriptional activity differences among the three subtypes and further explore the underlying factors. A total of 43 LTR5A elements, 62 LTR5B elements, and 194 LTR5Hs elements were selected. A phylogenetic tree showed that the LTR5Hs group was clearly separated from the LTR5A and LTR5B groups. A luciferase reporter assay indicated that LTR5Hs had the strongest promoter activity, followed by LTR5A and LTR5B. To investigate the underlying factors, LTR5Hs was divided into 4 sections, and the homologous fragments in LTR5B were replaced successively. Replacement of the third section (-263 to 0) significantly increased LTR5B activity. Subsequent mutation experiments revealed that the increased transcriptional activity was induced by the TATA box and the two p53 binding sites within the section. Further interference with significantly decreased LTR5Hs transcriptional activity. Chromatin immunoprecipitation (ChIP) and CUT&Tag experiments finally confirmed the direct binding of the p53 protein with the two LTR5Hs p53 binding sites. Overall, the two p53 binding sites in the third section (-263 to 0) of LTR5Hs were revealed to play critical roles in the difference in transcriptional activity among the three subtypes. Human endogenous retroviruses (HERVs) were integrated into the human genome in ancient times and have been coevolving with the host. Since the Human Genome Project, HERVs have attracted increasing attention. Many studies have focused on their characterization, evolution, and biological function. In particular, the expression of HERV-K has been associated with many diseases, such as germ cell tumors, neurotoxicity, ovarian cancer, prostate cancer, and melanoma. Indeed, two HML-2-produced proteins, Np9 and Rec, are associated with certain cancers. However, their roles in these disease associations remain unclear. The current work focused on subgroup HML-2 of HERV-K, which is recognized as the most biologically active subgroup, and aimed to explore the mechanistic basis of transcriptional activity. The results revealed that p53 deeply determined the activity of HML-2 LTR5Hs. p53 is a rather important tumor suppressor protein. It can regulate the expression of genes related to cell cycle arrest, organic processes, and apoptosis in response to cellular stress and is critical for the control of homeostasis. Previous ChIP and expression studies of individual genes suggested that p53 sites in HERV LTRs may be part of the p53 transcription program and directly regulate p53 target genes in a species-specific manner. However, the exact function of p53 in the regulation of HERV LTR expression is largely elusive. Our results clearly demonstrated the interaction between LTR5Hs of HML-2 and p53. They are of great significance for the future comprehensive study of the physiological and pathological functions of LTRs of HERVs.
人类内源性逆转录病毒 (HERV) 的长末端重复序列 (LTR) 分布在人类基因组中,并为调节其相邻基因的表达提供了有利条件。HERV-K 家族中最具生物学活性的亚群是 HML-2,其成员的表达与许多癌症类型有关。根据系统发育分析,HML-2 的 LTR 已分为三个亚群(LTR5A、LTR5B 和 LTR5Hs)。本研究旨在探讨这三个亚型之间 LTR 转录活性的差异,并进一步探讨潜在的因素。选择了 43 个 LTR5A 元件、62 个 LTR5B 元件和 194 个 LTR5Hs 元件。系统发育树显示,LTR5Hs 组明显与 LTR5A 和 LTR5B 组分离。萤光素酶报告基因检测表明,LTR5Hs 具有最强的启动子活性,其次是 LTR5A 和 LTR5B。为了研究潜在因素,将 LTR5Hs 分为 4 个部分,并依次替换 LTR5B 中的同源片段。替换第三个部分(-263 至 0)显著增加了 LTR5B 的活性。随后的突变实验表明,转录活性的增加是由第三部分内的 TATA 盒和两个 p53 结合位点诱导的。进一步干扰 显著降低了 LTR5Hs 的转录活性。染色质免疫沉淀(ChIP)和 CUT&Tag 实验最终证实了 p53 蛋白与 LTR5Hs 中两个 p53 结合位点的直接结合。总体而言,LTR5Hs 第三部分(-263 至 0)内的两个 p53 结合位点被揭示在三种亚型之间转录活性差异中起关键作用。
人类内源性逆转录病毒(HERV)在古代整合到人类基因组中,并与宿主共同进化。自人类基因组计划以来,HERV 引起了越来越多的关注。许多研究集中在它们的特征、进化和生物学功能上。特别是,HERV-K 的表达与许多疾病有关,如生殖细胞瘤、神经毒性、卵巢癌、前列腺癌和黑色素瘤。事实上,两种 HML-2 产生的蛋白质,Np9 和 Rec,与某些癌症有关。然而,它们在这些疾病关联中的作用仍不清楚。目前的工作集中在 HERV-K 的 HML-2 亚群上,该亚群被认为是最具生物学活性的亚群,旨在探讨转录活性的机制基础。结果表明,p53 深刻决定了 HML-2 LTR5Hs 的活性。p53 是一种相当重要的肿瘤抑制蛋白。它可以响应细胞应激,调节与细胞周期停滞、有机过程和细胞凋亡相关的基因表达,对维持体内平衡的控制至关重要。先前针对个别基因的 ChIP 和表达研究表明,HERV LTR 中的 p53 位点可能是 p53 转录程序的一部分,并以物种特异性的方式直接调节 p53 靶基因。然而,p53 在调节 HERV LTR 表达中的确切功能在很大程度上仍不清楚。我们的结果清楚地表明了 HML-2 的 LTR5Hs 与 p53 之间的相互作用。它们对未来全面研究 HERVs 的 LTRs 的生理和病理功能具有重要意义。