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DNA凝聚液滴的生长速率随参与亚基的大小而增加。

The Growth Rate of DNA Condensate Droplets Increases with the Size of Participating Subunits.

作者信息

Agarwal Siddharth, Osmanovic Dino, Klocke Melissa A, Franco Elisa

机构信息

Department of Mechanical and Aerospace Engineering, University of California at Los Angeles, Los Angeles, California 90024, United States.

Bioengineering, University of California at Los Angeles, Los Angeles, California 90024, United States.

出版信息

ACS Nano. 2022 Aug 23;16(8):11842-11851. doi: 10.1021/acsnano.2c00084. Epub 2022 Jul 22.

Abstract

Liquid-liquid phase separation (LLPS) is a common phenomenon underlying the formation of dynamic membraneless organelles in biological cells, which are emerging as major players in controlling cellular functions and health. The bottom-up synthesis of biomolecular liquid systems with simple constituents, like nucleic acids and peptides, is useful to understand LLPS in nature as well as to develop programmable means to build new amorphous materials with properties matching or surpassing those observed in natural condensates. In particular, understanding which parameters determine condensate growth kinetics is essential for the synthesis of condensates with the capacity for active, dynamic behaviors. Here we use DNA nanotechnology to study artificial liquid condensates through programmable star-shaped subunits, focusing on the effects of changing subunit size. First, we show that LLPS is achieved in a 6-fold range of subunit size. Second, we demonstrate that the rate of growth of condensate droplets scales with subunit size. Our investigation is supported by a general model that describes how coarsening and coalescence are expected to scale with subunit size under ideal assumptions. Beyond suggesting a route toward achieving control of LLPS kinetics via design of subunit size in synthetic liquids, our work suggests that particle size may be a key parameter in biological condensation processes.

摘要

液-液相分离(LLPS)是生物细胞中动态无膜细胞器形成的一种常见现象,这些细胞器正成为控制细胞功能和健康的主要参与者。利用简单成分(如核酸和肽)自下而上合成生物分子液体系统,有助于理解自然界中的液-液相分离现象,也有助于开发可编程方法来构建具有与天然凝聚物相当或更优性质的新型无定形材料。特别是,了解哪些参数决定凝聚物的生长动力学对于合成具有主动、动态行为能力的凝聚物至关重要。在这里,我们使用DNA纳米技术,通过可编程的星形亚基来研究人工液体凝聚物,重点关注改变亚基大小的影响。首先,我们表明在6倍的亚基大小范围内可实现液-液相分离。其次,我们证明凝聚物液滴的生长速率与亚基大小成比例。我们的研究得到了一个通用模型的支持,该模型描述了在理想假设下粗化和聚并如何随亚基大小而变化。除了提出一条通过设计合成液体中亚基大小来控制液-液相分离动力学的途径外,我们的工作还表明颗粒大小可能是生物凝聚过程中的一个关键参数。

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