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基于区块链的框架,支持药物基因组学数据共享。

A blockchain-based framework to support pharmacogenetic data sharing.

机构信息

Department of Computer Science, Kilburn Building, University of Manchester, Oxford Road, Manchester, M13 9PL, UK.

Department of Computer Science, College of Computer Science and Engineering, Taibah University, Madinah, Saudi Arabia.

出版信息

Pharmacogenomics J. 2022 Dec;22(5-6):264-275. doi: 10.1038/s41397-022-00285-5. Epub 2022 Jul 22.

Abstract

The successful implementation of pharmacogenetics (PGx) into clinical practice requires patient genomic data to be shared between stakeholders in multiple settings. This creates a number of barriers to widespread adoption of PGx, including privacy concerns related to the storage and movement of identifiable genomic data. Informatic solutions that support secure and equitable data access for genomic data are therefore important to PGx. Here we propose a methodology that uses smart contracts implemented on a blockchain-based framework, PGxChain, to address this issue. The design requirements for PGxChain were identified through a systematic literature review, identifying technical challenges and barriers impeding the clinical implementation of pharmacogenomics. These requirements included security and privacy, accessibility, interoperability, traceability and legal compliance. A proof-of-concept implementation based on Ethereum was then developed that met the design requirements. PGxChain's performance was examined using Hyperledger Caliper for latency, throughput, and transaction success rate. The findings clearly indicate that blockchain technology offers considerable potential to advance pharmacogenetic data sharing, particularly with regard to PGx data security and privacy, large-scale accessibility of PGx data, PGx data interoperability between multiple health care providers and compliance with data-sharing laws and regulations.

摘要

要将药物遗传学(PGx)成功应用于临床实践,需要在多个环境中共享患者基因组数据,这就需要在多个利益相关者之间共享患者基因组数据。这为 PGx 的广泛采用设置了许多障碍,包括与可识别基因组数据的存储和移动相关的隐私问题。因此,支持基因组数据安全和公平访问的信息学解决方案对于 PGx 非常重要。在这里,我们提出了一种使用区块链框架(PGxChain)上的智能合约来解决这个问题的方法。通过对系统文献的回顾,确定了 PGxChain 的设计要求,这些要求识别了阻碍药物基因组学临床实施的技术挑战和障碍。这些要求包括安全性和隐私性、可访问性、互操作性、可追溯性和法律合规性。然后,根据以太坊开发了一个满足设计要求的概念验证实现。使用 Hyperledger Caliper 检查了 PGxChain 的性能,以评估延迟、吞吐量和事务成功率。研究结果清楚地表明,区块链技术在推进药物遗传学数据共享方面具有很大的潜力,特别是在 PGx 数据安全性和隐私性、PGx 数据在多个医疗服务提供者之间的大规模可访问性、PGx 数据的互操作性以及数据共享法律法规的合规性方面。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/20c0/9674519/540d3fda9733/41397_2022_285_Fig1_HTML.jpg

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