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在. 的细胞胺化网络的灵活性。

On the flexibility of the cellular amination network in .

机构信息

Max Planck Institute of Molecular Plant Physiology, Potsdam, Germany.

Max Planck Institute for Terrestrial Microbiology, Marburg, Germany.

出版信息

Elife. 2022 Jul 25;11:e77492. doi: 10.7554/eLife.77492.

Abstract

Ammonium (NH) is essential to generate the nitrogenous building blocks of life. It gets assimilated via the canonical biosynthetic routes to glutamate and is further distributed throughout metabolism via a network of transaminases. To study the flexibility of this network, we constructed an glutamate auxotrophic strain. This strain allowed us to systematically study which amino acids serve as amine sources. We found that several amino acids complemented the auxotrophy either by producing glutamate via transamination reactions or by their conversion to glutamate. In this network, we identified aspartate transaminase AspC as a major connector between many amino acids and glutamate. Additionally, we extended the transaminase network by the amino acids β-alanine, alanine, glycine, and serine as new amine sources and identified d-amino acid dehydrogenase (DadA) as an intracellular amino acid sink removing substrates from transaminase reactions. Finally, ammonium assimilation routes producing aspartate or leucine were introduced. Our study reveals the high flexibility of the cellular amination network, both in terms of transaminase promiscuity and adaptability to new connections and ammonium entry points.

摘要

氨(NH)是生成生命含氮结构单元所必需的。它通过经典的生物合成途径被谷氨酸同化,并通过转氨酶网络分布在整个代谢过程中。为了研究这个网络的灵活性,我们构建了一个谷氨酸营养缺陷型菌株。这个菌株使我们能够系统地研究哪些氨基酸可以作为胺的来源。我们发现,一些氨基酸通过转氨基反应产生谷氨酸或通过转化为谷氨酸来补充营养缺陷。在这个网络中,我们确定天冬氨酸转氨酶 AspC 是许多氨基酸与谷氨酸之间的主要连接酶。此外,我们通过β-丙氨酸、丙氨酸、甘氨酸和丝氨酸等氨基酸扩展了转氨酶网络,将其作为新的胺源,并鉴定出 D-氨基酸脱氢酶(DadA)作为一种细胞内氨基酸汇,从转氨酶反应中去除底物。最后,引入了产生天冬氨酸或亮氨酸的氨同化途径。我们的研究揭示了细胞胺化网络的高度灵活性,无论是在转氨酶的混杂性还是适应新连接和氨进入点方面。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1c20/9436414/058b6cbac837/elife-77492-fig1.jpg

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