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利用免疫芯片基因分型数据对撒丁岛家族中多发性硬化相关血浆蛋白水平进行遗传力估计

Heritability Estimation of Multiple Sclerosis Related Plasma Protein Levels in Sardinian Families with Immunochip Genotyping Data.

作者信息

Nova Andrea, Baldrighi Giulia Nicole, Fazia Teresa, Graziano Francesca, Saddi Valeria, Piras Marialuisa, Beecham Ashley, McCauley Jacob L, Bernardinelli Luisa

机构信息

Department of Brain and Behavioral Sciences, University of Pavia, 27100 Pavia, Italy.

Centre of Biostatistics for Clinical Epidemiology, University of Milano-Bicocca, 20900 Monza, Italy.

出版信息

Life (Basel). 2022 Jul 21;12(7):1101. doi: 10.3390/life12071101.

Abstract

This work aimed at estimating narrow-sense heritability, defined as the proportion of the phenotypic variance explained by the sum of additive genetic effects, via Haseman-Elston regression for a subset of 56 plasma protein levels related to Multiple Sclerosis (MS). These were measured in 212 related individuals (with 69 MS cases and 143 healthy controls) obtained from 20 Sardinian families with MS history. Using pedigree information, we found seven statistically significant heritable plasma protein levels (after multiple testing correction), i.e., Gc (h2 = 0.77; 95%CI: 0.36, 1.00), Plat (h2 = 0.70; 95%CI: 0.27, 0.95), Anxa1 (h2 = 0.68; 95%CI: 0.27, 1.00), Sod1 (h2 = 0.58; 95%CI: 0.18, 0.96), Irf8 (h2 = 0.56; 95%CI: 0.19, 0.99), Ptger4 (h2 = 0.45; 95%CI: 0.10, 0.96), and Fadd (h2 = 0.41; 95%CI: 0.06, 0.84). A subsequent analysis was performed on these statistically significant heritable plasma protein levels employing Immunochip genotyping data obtained in 155 healthy controls (92 related and 63 unrelated); we found a meaningful proportion of heritable plasma protein levels' variability explained by a small set of SNPs. Overall, the results obtained, for these seven MS-related proteins, emphasized a high additive genetic variance component explaining plasma levels' variability.

摘要

这项研究旨在通过Haseman-Elston回归,对56种与多发性硬化症(MS)相关的血浆蛋白水平进行狭义遗传力估计,狭义遗传力定义为加性遗传效应总和所解释的表型变异比例。这些血浆蛋白水平在来自20个有MS病史的撒丁岛家庭的212名相关个体(69例MS患者和143名健康对照)中进行了测量。利用系谱信息,我们发现了7种具有统计学意义的可遗传血浆蛋白水平(经过多重检验校正),即Gc(h2 = 0.77;95%置信区间:0.36,1.00)、Plat(h2 = 0.70;95%置信区间:0.27,0.95)、Anxa1(h2 = 0.68;95%置信区间:0.27,1.00)、Sod1(h2 = 0.58;95%置信区间:0.18,0.96)、Irf8(h2 = 0.56;95%置信区间:0.19,0.99)、Ptger4(h2 = 0.45;95%置信区间:0.10,0.96)和Fadd(h2 = 0.41;95%置信区间:0.06,0.84)。随后,对这些具有统计学意义的可遗传血浆蛋白水平进行了分析,采用了在155名健康对照(92名相关个体和63名无关个体)中获得的免疫芯片基因分型数据;我们发现一小部分单核苷酸多态性(SNP)解释了可遗传血浆蛋白水平变异的相当一部分。总体而言,对于这7种与MS相关的蛋白质所获得的结果强调了一个高加性遗传方差成分解释了血浆水平的变异性。

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