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Evolutionary Relationship and the Sequence Similarities among Different Fungal Species Infecting Birds Captured from Different Areas in Denmark.丹麦不同地区捕获的感染鸟类的不同真菌物种之间的进化关系和序列相似性。
Arch Razi Inst. 2022 Feb 28;77(1):491-496. doi: 10.22092/ARI.2021.356858.1929. eCollection 2022 Feb.
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本文引用的文献

1
Not so black, not so white: differences in microorganism load of contiguous feathers from white stork chicks.并非非黑即白:白鹳雏鸟相邻羽毛微生物负荷的差异
Curr Zool. 2020 Oct 16;67(3):263-270. doi: 10.1093/cz/zoaa062. eCollection 2021 Jun.
2
Fungi, feather damage, and risk of predation.真菌、羽毛损伤与被捕食风险。
Ecol Evol. 2017 Nov 8;7(24):10797-10803. doi: 10.1002/ece3.3582. eCollection 2017 Dec.
3
Identification of Habitat-Specific Biomes of Aquatic Fungal Communities Using a Comprehensive Nearly Full-Length 18S rRNA Dataset Enriched with Contextual Data.利用富含背景数据的综合近全长18S rRNA数据集鉴定水生真菌群落的特定栖息地生物群落。
PLoS One. 2015 Jul 30;10(7):e0134377. doi: 10.1371/journal.pone.0134377. eCollection 2015.
4
Similarity evaluation of DNA sequences based on frequent patterns and entropy.基于频繁模式和熵的DNA序列相似性评估
BMC Genomics. 2015;16 Suppl 3(Suppl 3):S5. doi: 10.1186/1471-2164-16-S3-S5. Epub 2015 Jan 29.
5
Do feather-degrading bacteria actually degrade feather colour? No significant effects of plumage microbiome modifications on feather colouration in wild great tits.羽毛降解细菌真的会使羽毛褪色吗?野生大山雀羽毛微生物群的改变对羽毛颜色没有显著影响。
Naturwissenschaften. 2014 Nov;101(11):929-38. doi: 10.1007/s00114-014-1234-7. Epub 2014 Sep 17.
6
Genomic divergence during speciation: causes and consequences.物种形成过程中的基因组分化:原因和后果。
Philos Trans R Soc Lond B Biol Sci. 2012 Feb 5;367(1587):332-42. doi: 10.1098/rstb.2011.0263.
7
Finding single copy genes out of sequenced genomes for multilocus phylogenetics in non-model fungi.从测序基因组中寻找单拷贝基因,用于非模式真菌的多位点系统发育分析。
PLoS One. 2011 Apr 13;6(4):e18803. doi: 10.1371/journal.pone.0018803.
8
Bacterial pathogens in wild birds: a review of the frequency and effects of infection.野生鸟类中的细菌病原体:感染频率及影响综述
Biol Rev Camb Philos Soc. 2009 Aug;84(3):349-73. doi: 10.1111/j.1469-185X.2008.00076.x. Epub 2009 Apr 29.
9
A hierarchical view of convergent evolution in microbial eukaryotes.微生物真核生物趋同进化的层次视图。
J Eukaryot Microbiol. 2008 Mar-Apr;55(2):59-68. doi: 10.1111/j.1550-7408.2008.00308.x.
10
Fungal diseases of birds of prey.猛禽的真菌病
Vet Clin North Am Exot Anim Pract. 2003 May;6(2):363-76. doi: 10.1016/s1094-9194(03)00004-5.

丹麦不同地区捕获的感染鸟类的不同真菌物种之间的进化关系和序列相似性。

Evolutionary Relationship and the Sequence Similarities among Different Fungal Species Infecting Birds Captured from Different Areas in Denmark.

作者信息

Shaker Al-Rubaiee Z, Salh Hussin M, Baho S

机构信息

Biological Department, College of Science, Mustansiriya University, Baghdad, Iraq.

出版信息

Arch Razi Inst. 2022 Feb 28;77(1):491-496. doi: 10.22092/ARI.2021.356858.1929. eCollection 2022 Feb.

DOI:10.22092/ARI.2021.356858.1929
PMID:35891731
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9288641/
Abstract

Fungal diseases are the common cause of death in wild animals and birds of prey. This study was designed to investigate the development of fungal infections among wild birds in Denmark. In this study, fungal samples were isolated from such sources as Barn swallows' feathers, White stork, and birds of prey. The fungal species were isolated by direct culture of feathers on SD Agar with chloramphenicol and incubated at 28±2ºC. The fungal genomic DNA was isolated from each species, PCR reaction was performed, and the resulting fragments of the 18S rRNA DNA were sequenced and used for identification. A comparison between the resulting fragments was made to find out the percentage of similarity among the different fungal species. The multiple sequence alignment showed percentages of similarities ranging from 39% to 99%. To sum up, the 18S rRNA DNA sequence has been evolved dramatically even within the same species, while still conserved in others. It is a useful tool to be used for the identification of fungal species as it reduces time. Moreover, according to the results, there were no comprehensive high homology percentages among the species infecting the same bird.

摘要

真菌病是野生动物和猛禽死亡的常见原因。本研究旨在调查丹麦野生鸟类中真菌感染的发展情况。在本研究中,从家燕羽毛、白鹳和猛禽等来源分离真菌样本。通过将羽毛直接接种在含氯霉素的SD琼脂上进行培养来分离真菌物种,并在28±2℃下孵育。从每个物种中分离真菌基因组DNA,进行PCR反应,对所得的18S rRNA DNA片段进行测序并用于鉴定。对所得片段进行比较以找出不同真菌物种之间的相似百分比。多重序列比对显示相似百分比范围为39%至99%。综上所述,即使在同一物种内,18S rRNA DNA序列也发生了显著进化,而在其他物种中仍保持保守。它是一种用于鉴定真菌物种的有用工具,因为它节省时间。此外,根据结果,感染同一只鸟的物种之间没有全面的高同源百分比。