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一种通过原子力显微镜对M13噬菌体进行定量分析的新方法。

A new method for quantitative analysis of M13 bacteriophage by atomic force microscopy.

作者信息

Wu Yuting, Liu Shuai, Liu Zhiwei, Liu Bing, Du Bin, Tong Zhaoyang, Xu Jianjie

机构信息

State Key Laboratory of NBC Protection for Civilian, Beijing, 102205, China.

出版信息

Synth Syst Biotechnol. 2022 Jul 13;7(4):1066-1072. doi: 10.1016/j.synbio.2022.07.001. eCollection 2022 Dec.

DOI:10.1016/j.synbio.2022.07.001
PMID:35891946
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9293941/
Abstract

Quantitative analysis is essential for virus research, especially in determining the virus titer. The classical method plaque assay is time-consuming, complex, and difficult for the phages that cannot form apparent plaque on the solid medium. In order to realize rapid and effective detection, a new method combining atomic force microscopy (AFM) observation and mathematical calculation is established. In this research, M13 phages with an appropriate dilution ratio were observed and counted by AFM. Based on the counting results, the titer of M13 phages can be calculated simply through mathematical substitution. Instead of cultivating overnight in plaque assay, this new method can be implemented within a few hours. Moreover, it is a method that can achieve visualization for titer determination and have the potential to determine the phages that fail to form apparent plaque, which is significant in virus quantitative assessment.

摘要

定量分析对于病毒研究至关重要,尤其是在确定病毒滴度方面。经典的噬菌斑测定法耗时、复杂,对于无法在固体培养基上形成明显噬菌斑的噬菌体来说操作困难。为了实现快速有效的检测,建立了一种结合原子力显微镜(AFM)观察和数学计算的新方法。在本研究中,通过AFM观察并计数了具有适当稀释比例的M13噬菌体。基于计数结果,只需通过数学代换即可简单计算出M13噬菌体的滴度。与噬菌斑测定法中需要过夜培养不同,这种新方法可以在几小时内完成。此外,这是一种能够实现滴度测定可视化且有潜力测定无法形成明显噬菌斑的噬菌体的方法,在病毒定量评估中具有重要意义。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1ccc/9293941/2e40b324fb8a/gr5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1ccc/9293941/7f3fb02850f0/gr1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1ccc/9293941/5e32f61494fc/gr2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1ccc/9293941/1cfd58b4a947/gr3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1ccc/9293941/32dc3ad88e64/gr4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1ccc/9293941/2e40b324fb8a/gr5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1ccc/9293941/7f3fb02850f0/gr1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1ccc/9293941/5e32f61494fc/gr2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1ccc/9293941/1cfd58b4a947/gr3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1ccc/9293941/32dc3ad88e64/gr4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1ccc/9293941/2e40b324fb8a/gr5.jpg

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本文引用的文献

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Quantitative Assessment of the Physical Virus Titer and Purity by Ultrasensitive Flow Virometry.通过超敏流病毒仪对物理病毒滴度和纯度进行定量评估。
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Angew Chem Int Ed Engl. 2018 Apr 3;57(15):3888-3908. doi: 10.1002/anie.201703509. Epub 2018 Feb 27.
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Quantification of M13 and T7 bacteriophages by TaqMan and SYBR green qPCR.TaqMan 和 SYBR 绿 qPCR 定量检测 M13 和 T7 噬菌体。
J Virol Methods. 2018 Feb;252:100-107. doi: 10.1016/j.jviromet.2017.11.012. Epub 2017 Dec 2.
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Real-Time qPCR as a Method for Detection of Antibody-Neutralized Phage Particles.实时定量聚合酶链反应作为检测抗体中和噬菌体颗粒的一种方法。
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Designing a direct ELISA kit for the detection of Staphylococcus aureus enterotoxin A in raw milk samples.设计一种用于检测生奶样品中金黄色葡萄球菌肠毒素 A 的直接 ELISA 试剂盒。
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Enumeration of bacteriophage particles: Comparative analysis of the traditional plaque assay and real-time QPCR- and nanosight-based assays.噬菌体颗粒计数:传统噬菌斑测定法与基于实时定量聚合酶链反应和纳米可视技术的测定法的比较分析
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