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基因组挖掘作为一种筛选海洋生物产生 UV 吸收性类菌孢素氨基酸潜力的替代方法。

Genome Mining as an Alternative Way for Screening the Marine Organisms for Their Potential to Produce UV-Absorbing Mycosporine-like Amino Acid.

机构信息

Faculty of Health, Southern Cross University, Gold Coast, QLD 4225, Australia.

Marine Ecology Research Centre, Southern Cross University, Lismore, NSW 2480, Australia.

出版信息

Mar Drugs. 2022 Jul 26;20(8):478. doi: 10.3390/md20080478.

Abstract

Mycosporine-like amino acids (MAAs) are small molecules with robust ultraviolet (UV)-absorbing capacities and a huge potential to be used as an environmentally friendly natural sunscreen. MAAs, temperature, and light-stable compounds demonstrate powerful photoprotective capacities and the ability to capture light in the UV-A and UV-B ranges without the production of damaging free radicals. The biotechnological uses of these secondary metabolites have been often limited by the small quantities restored from natural resources, variation in MAA expression profiles, and limited success in heterologous expression systems. Overcoming these obstacles requires a better understanding of MAA biosynthesis and its regulatory processes. MAAs are produced to a certain extent via a four-enzyme pathway, including genes encoding enzymes , , , and . However, there are substantial genetic discrepancies in the MAA genetic pathway in different species, suggesting further complexity of this pathway that is yet to be fully explored. In recent years, the application of genome-mining approaches allowed the identification of biosynthetic gene clusters (BGCs) that resulted in the discovery of many new compounds from unconventional sources. This review explores the use of novel genomics tools for linking BGCs and secondary metabolites based on the available omics data, including MAAs, and evaluates the potential of using novel genome-mining tools to reveal a cryptic potential for new bioproduct screening approaches and unrevealing new MAA producers.

摘要

肌肽类似氨基酸(MAAs)是具有强大紫外线(UV)吸收能力的小分子,具有成为环保天然防晒霜的巨大潜力。MAAs、温度和稳定的化合物具有强大的光保护能力,能够在不产生有害自由基的情况下捕获 UV-A 和 UV-B 范围内的光。

这些次生代谢物的生物技术应用经常受到从自然资源中恢复的数量有限、MAA 表达谱的变化以及异源表达系统中成功有限的限制。克服这些障碍需要更好地了解 MAA 的生物合成及其调控过程。

MAAs 在一定程度上是通过一个四酶途径产生的,包括编码酶、、和的基因。然而,不同物种的 MAA 遗传途径存在很大的遗传差异,这表明该途径的复杂性还有待进一步探索。

近年来,基因组挖掘方法的应用允许鉴定生物合成基因簇(BGCs),从而从非常规来源中发现了许多新的化合物。

**本综述探讨了基于现有组学数据(包括 MAAs)利用新型基因组学工具将 BGCs 与次生代谢物联系起来的方法,并评估了利用新型基因组挖掘工具揭示新生物产品筛选方法的潜在隐式和揭示新 MAA 生产者的潜力。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ec38/9394291/a47d921aa7df/marinedrugs-20-00478-g001.jpg

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