• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

基于 ABA、低温和光周期应答的休眠营养芽基因家族的全基因组鉴定和表达分析。

Genome-Wide Identification and Expression Analysis of Gene Family in Dormant Vegetative Buds of in Response to Abscisic Acid, Chilling, and Photoperiod.

机构信息

State Key Laboratory of Subtropical Silviculture, Zhejiang A&F University, 666 Wusu Street, Hangzhou 311300, China.

Key Laboratory of Modern Silvicultural Technology of Zhejiang Province, Hangzhou 311300, China.

出版信息

Genes (Basel). 2022 Jul 22;13(8):1305. doi: 10.3390/genes13081305.

DOI:10.3390/genes13081305
PMID:35893042
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9331246/
Abstract

Protein kinases play an essential role in plants' responses to environmental stress signals. (sucrose non-fermenting 1-related protein kinase 2) is a plant-specific protein kinase that plays a crucial role in abscisic acid and abiotic stress responses in some model plant species. In apple, corn, rice, pepper, grapevine, , potato, and tomato, a genome-wide study of the SnRK2 protein family was performed earlier. The genome-wide comprehensive investigation was first revealed to categorize the genes in the . The five genes found in the genome were highlighted in this study. The structural gene variants, 3D structure, chromosomal distributions, motif analysis, phylogeny, subcellular localization, cis-regulatory elements, expression profiles in dormant buds, and photoperiod and chilling responses were all investigated in this research. The five genes from were grouped into groups (I-IV) based on phylogeny analysis, with three being closely related to other species. Five hormones-, six stress-, two growths and biological process-, and two metabolic-related responsive elements were discovered by studying the cis-elements in the promoters. According to the expression analyses, all five genes were up- and down-regulated in response to abscisic acid (ABA), photoperiod, chilling, and chilling, as well as photoperiod treatments. Our findings gave insight into the family genes in and opened up new study options.

摘要

蛋白激酶在植物对环境胁迫信号的响应中发挥着重要作用。(蔗糖非发酵 1 相关蛋白激酶 2)是一种植物特异性蛋白激酶,在一些模式植物物种的脱落酸和非生物胁迫响应中起着关键作用。在苹果、玉米、水稻、辣椒、葡萄、土豆和番茄中,先前对 SnRK2 蛋白家族进行了全基因组研究。本研究首次全面揭示了该家族的分类。本研究重点研究了 基因组中发现的 5 个 基因。该研究还对结构基因变异体、3D 结构、染色体分布、基序分析、系统发育、亚细胞定位、顺式调控元件、休眠芽中的表达谱以及光周期和冷胁迫响应进行了研究。根据系统发育分析,将 中的 5 个 基因分为 I-IV 组,其中 3 个与其他物种密切相关。通过研究启动子中的顺式元件,发现了 5 个激素、6 个应激、2 个生长和生物过程以及 2 个代谢相关的响应元件。根据表达分析,所有 5 个基因都对脱落酸(ABA)、光周期、冷胁迫和冷胁迫以及光周期处理有上调和下调的反应。我们的研究结果深入了解了 中的 家族基因,并为新的研究提供了选择。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/10a1/9331246/3c31e32b22ea/genes-13-01305-g008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/10a1/9331246/2fa97b655301/genes-13-01305-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/10a1/9331246/a6e48aec1d13/genes-13-01305-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/10a1/9331246/ffa79a5effb1/genes-13-01305-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/10a1/9331246/87f1e42499d3/genes-13-01305-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/10a1/9331246/cb6c7979d12a/genes-13-01305-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/10a1/9331246/baf84e29bd50/genes-13-01305-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/10a1/9331246/a1f02eefdc47/genes-13-01305-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/10a1/9331246/3c31e32b22ea/genes-13-01305-g008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/10a1/9331246/2fa97b655301/genes-13-01305-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/10a1/9331246/a6e48aec1d13/genes-13-01305-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/10a1/9331246/ffa79a5effb1/genes-13-01305-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/10a1/9331246/87f1e42499d3/genes-13-01305-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/10a1/9331246/cb6c7979d12a/genes-13-01305-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/10a1/9331246/baf84e29bd50/genes-13-01305-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/10a1/9331246/a1f02eefdc47/genes-13-01305-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/10a1/9331246/3c31e32b22ea/genes-13-01305-g008.jpg

相似文献

1
Genome-Wide Identification and Expression Analysis of Gene Family in Dormant Vegetative Buds of in Response to Abscisic Acid, Chilling, and Photoperiod.基于 ABA、低温和光周期应答的休眠营养芽基因家族的全基因组鉴定和表达分析。
Genes (Basel). 2022 Jul 22;13(8):1305. doi: 10.3390/genes13081305.
2
Identification and characteristics of SnRK genes and cold stress-induced expression profiles in Liriodendron chinense.鉴定和特征分析中国鹅掌楸中的 SnRK 基因及其在冷胁迫下的表达谱。
BMC Genomics. 2022 Oct 18;23(1):708. doi: 10.1186/s12864-022-08902-0.
3
Identification and expression analysis of the CqSnRK2 gene family and a functional study of the CqSnRK2.12 gene in quinoa (Chenopodium quinoa Willd.).鉴定和表达分析藜科 CqSnRK2 基因家族和 CqSnRK2.12 基因在藜麦中的功能研究。
BMC Genomics. 2022 May 24;23(1):397. doi: 10.1186/s12864-022-08626-1.
4
Genome-wide identification of the Liriodendron chinense WRKY gene family and its diverse roles in response to multiple abiotic stress.中国鹅掌楸 WRKY 基因家族的全基因组鉴定及其在多种非生物胁迫响应中的多样化功能。
BMC Plant Biol. 2022 Jan 10;22(1):25. doi: 10.1186/s12870-021-03371-1.
5
Genome-wide identification and expression profiling of the SnRK2 gene family in Malus prunifolia.平邑甜茶中SnRK2基因家族的全基因组鉴定与表达谱分析
Gene. 2014 Nov 15;552(1):87-97. doi: 10.1016/j.gene.2014.09.017. Epub 2014 Sep 12.
6
Genome-wide identification of PYL/PYR-PP2C (A)-SnRK2 genes in Eutrema and their co-expression analysis in response to ABA and abiotic stresses.在蕻菜属中鉴定 PYL/PYR-PP2C(A)-SnRK2 基因的全基因组及其对 ABA 和非生物胁迫的共表达分析。
Int J Biol Macromol. 2023 Dec 31;253(Pt 2):126701. doi: 10.1016/j.ijbiomac.2023.126701. Epub 2023 Sep 4.
7
Genome-wide identification and characterization of SnRK2 gene family in cotton (Gossypium hirsutum L.).棉花(陆地棉)中SnRK2基因家族的全基因组鉴定与特征分析。
BMC Genet. 2017 Jun 12;18(1):54. doi: 10.1186/s12863-017-0517-3.
8
The Arabidopsis kinase-associated protein phosphatase KAPP, interacting with protein kinases SnRK2.2/2.3/2.6, negatively regulates abscisic acid signaling.拟南芥激酶相关蛋白磷酸酶 KAPP 与蛋白激酶 SnRK2.2/2.3/2.6 相互作用,负调控脱落酸信号。
Plant Mol Biol. 2020 Jan;102(1-2):199-212. doi: 10.1007/s11103-019-00941-8. Epub 2019 Dec 7.
9
Genome-wide analysis and evolutionary study of sucrose non-fermenting 1-related protein kinase 2 (SnRK2) gene family members in Arabidopsis and Oryza.拟南芥和水稻中蔗糖非发酵1相关蛋白激酶2(SnRK2)基因家族成员的全基因组分析及进化研究
Comput Biol Chem. 2014 Apr;49:59-70. doi: 10.1016/j.compbiolchem.2013.09.005. Epub 2013 Oct 25.
10
Initiation and amplification of SnRK2 activation in abscisic acid signaling.在脱落酸信号转导中 SnRK2 的激活起始和放大。
Nat Commun. 2021 Apr 28;12(1):2456. doi: 10.1038/s41467-021-22812-x.

引用本文的文献

1
Genome-wide identification, characterization, and expression analysis of the SOS1 gene family in the medicinal plant under salt stress.盐胁迫下药用植物中SOS1基因家族的全基因组鉴定、特征分析及表达分析
Front Plant Sci. 2025 Jul 30;16:1614011. doi: 10.3389/fpls.2025.1614011. eCollection 2025.
2
gene family in : genome-wide identification, expression analysis, and response to five different copper stress conditions.基因家族研究:全基因组鉴定、表达分析及对五种不同铜胁迫条件的响应
Front Plant Sci. 2024 Jan 4;14:1318383. doi: 10.3389/fpls.2023.1318383. eCollection 2023.
3
Genome-Wide Identification, Characterization, and Expression Analysis of the Copper-Containing Amine Oxidase Gene Family in Mangrove .

本文引用的文献

1
Genome-Wide Identification and Expression Profile Analysis of the SnRK2 Gene Family in Nicotiana tabacum.烟草基因组中 SnRK2 基因家族的全基因组鉴定和表达谱分析。
Biochem Genet. 2022 Oct;60(5):1511-1526. doi: 10.1007/s10528-021-10170-8. Epub 2022 Jan 20.
2
Genome-wide survey and identification of AP2/ERF genes involved in shoot and leaf development in Liriodendron chinense.对鹅掌楸属茎和叶发育相关的 AP2/ERF 基因进行全基因组调查和鉴定。
BMC Genomics. 2021 Nov 8;22(1):807. doi: 10.1186/s12864-021-08119-7.
3
Genome-Wide Identification and Expression Analysis of Family Genes Associated with Petal Pigment Synthesis in .
基因组范围内鉴定、表征和表达分析红树中含铜胺氧化酶基因家族。
Int J Mol Sci. 2023 Dec 9;24(24):17312. doi: 10.3390/ijms242417312.
4
Genome-Wide Identification and Expression Analysis of the Copper Transporter (/) Gene Family in , a Typical Mangrove Plant.基因组范围内鉴定与表达分析在 ,一种典型的红树林植物中的铜转运体(/)基因家族。
Int J Mol Sci. 2023 Oct 25;24(21):15579. doi: 10.3390/ijms242115579.
5
Genome-Wide Identification, and In-Silico Expression Analysis of YABBY Gene Family in Response to Biotic and Abiotic Stresses in Potato ().马铃薯应对生物和非生物胁迫的 YABBY 基因家族的全基因组鉴定和计算机表达分析()。
Genes (Basel). 2023 Mar 29;14(4):824. doi: 10.3390/genes14040824.
在 中与花瓣色素合成相关的 家族基因的全基因组鉴定和表达分析。
Int J Mol Sci. 2021 Oct 19;22(20):11291. doi: 10.3390/ijms222011291.
4
Transcription Factors Interact with ABA through Gene Expression and Signaling Pathways to Mitigate Drought and Salinity Stress.转录因子通过基因表达和信号通路与 ABA 相互作用,以减轻干旱和盐胁迫。
Biomolecules. 2021 Aug 5;11(8):1159. doi: 10.3390/biom11081159.
5
Genome-Wide Analysis and Expression Profile of Superoxide Dismutase (SOD) Gene Family in Rapeseed ( L.) under Different Hormones and Abiotic Stress Conditions.不同激素和非生物胁迫条件下油菜中超氧化物歧化酶(SOD)基因家族的全基因组分析及表达谱
Antioxidants (Basel). 2021 Jul 25;10(8):1182. doi: 10.3390/antiox10081182.
6
Morphological, phenological, and transcriptional analyses provide insight into the diverse flowering traits of a mutant of the relic woody plant Liriodendron chinense.形态学、物候学和转录组分析为古老木本植物鹅掌楸突变体的多样开花性状提供了深入见解。
Hortic Res. 2021 Aug 1;8(1):174. doi: 10.1038/s41438-021-00610-2.
7
Gibberellin Oxidase Gene Family in : Genome-Wide Identification and Gene Expression Analysis.赤霉素氧化酶基因家族在 : 全基因组鉴定和基因表达分析。
Int J Mol Sci. 2021 Jul 2;22(13):7167. doi: 10.3390/ijms22137167.
8
Bud endodormancy in deciduous fruit trees: advances and prospects.落叶果树芽的内休眠:进展与展望
Hortic Res. 2021 Jun 1;8(1):139. doi: 10.1038/s41438-021-00575-2.
9
Catalase (CAT) Gene Family in Rapeseed ( L.): Genome-Wide Analysis, Identification, and Expression Pattern in Response to Multiple Hormones and Abiotic Stress Conditions.油菜(L.)过氧化氢酶(CAT)基因家族:全基因组分析、鉴定及对多种激素和非生物胁迫条件的表达模式。
Int J Mol Sci. 2021 Apr 20;22(8):4281. doi: 10.3390/ijms22084281.
10
MEGA11: Molecular Evolutionary Genetics Analysis Version 11.MEGA11:分子进化遗传学分析版本 11。
Mol Biol Evol. 2021 Jun 25;38(7):3022-3027. doi: 10.1093/molbev/msab120.