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利用大尺寸工业级高分辨率 X 射线断层扫描仪器对复杂植物结构进行表型分析。

Phenotyping Complex Plant Structures with a Large Format Industrial Scale High-Resolution X-Ray Tomography Instrument.

机构信息

Donald Danforth Plant Science Center, Saint Louis, MO, USA.

出版信息

Methods Mol Biol. 2022;2539:119-132. doi: 10.1007/978-1-0716-2537-8_12.

DOI:10.1007/978-1-0716-2537-8_12
PMID:35895201
Abstract

Phenotyping specific plant traits is difficult when the samples to be measured are architecturally complex. Inflorescence and root system traits are of great biological interest, but these structures present unique phenotyping challenges due to their often complicated and three-dimensional (3D) forms. We describe how a large industrial scale X-ray tomography (XRT) instrument can be used to scan architecturally complex plant structures for the goal of rapid and accurate measurement of traits that are otherwise cumbersome or not possible to capture by other means. The combination of a large imaging cabinet that can accommodate a wide range of sample size geometries and a variable microfocus reflection X-ray source allows noninvasive X-ray imaging and 3D volume generation of diverse sample types. Specific sample fixturing (mounting) and scanning conditions are presented. These techniques can be moderate to high throughput and still provide unprecedented levels of accuracy and information content in the 3D volume data they generate.

摘要

当需要测量的样本具有复杂的结构时,对特定植物性状进行表型分析是很困难的。花序和根系性状具有重要的生物学意义,但由于它们通常具有复杂的三维(3D)形态,因此这些结构提出了独特的表型分析挑战。我们描述了如何使用大型工业规模的 X 射线断层扫描(XRT)仪器来扫描具有复杂结构的植物结构,以便快速准确地测量其他方法难以或不可能捕捉到的性状。大容量成像箱可容纳各种尺寸的样本,且配备可变微焦反射 X 射线源,这一组合使得非侵入式 X 射线成像和各种样本类型的 3D 体积生成成为可能。我们提出了具体的样本固定(安装)和扫描条件。这些技术具有中等到高通量的特点,在生成的 3D 体积数据中仍能提供前所未有的准确性和信息量。

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本文引用的文献

1
X-Ray Computed Tomography of Crop Plant Root Systems Grown in Soil.生长在土壤中的农作物根系的X射线计算机断层扫描
Curr Protoc Plant Biol. 2017 Dec;2(4):270-286. doi: 10.1002/cppb.20049.
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Micron-scale phenotyping quantification and three-dimensional microstructure reconstruction of vascular bundles within maize stalks based on micro-CT scanning.基于显微CT扫描的玉米茎秆维管束微米级表型量化及三维微观结构重建
Funct Plant Biol. 2016 Feb;44(1):10-22. doi: 10.1071/FP16117.
3
Comprehensive 3D phenotyping reveals continuous morphological variation across genetically diverse sorghum inflorescences.
综合 3D 表型分析揭示了遗传多样性高粱花序的连续形态变异。
New Phytol. 2020 Jun;226(6):1873-1885. doi: 10.1111/nph.16533. Epub 2020 Apr 16.
4
Whole-Plant Manual and Image-Based Phenotyping in Controlled Environments.受控环境中的全株手册及基于图像的表型分析
Curr Protoc Plant Biol. 2017 Mar;2(1):1-21. doi: 10.1002/cppb.20044.
5
Characterizing 3D inflorescence architecture in grapevine using X-ray imaging and advanced morphometrics: implications for understanding cluster density.利用 X 射线成像和先进形态计量学对葡萄藤的三维花序结构进行描述:对理解果穗密度的意义。
J Exp Bot. 2019 Nov 18;70(21):6261-6276. doi: 10.1093/jxb/erz394.
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Three-Dimensional Time-Lapse Analysis Reveals Multiscale Relationships in Maize Root Systems with Contrasting Architectures.三维时程分析揭示了具有不同结构的玉米根系的多尺度关系。
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Root architecture governs plasticity in response to drought.根系结构决定了对干旱响应的可塑性。
Plant Soil. 2018;433(1):189-200. doi: 10.1007/s11104-018-3824-1. Epub 2018 Oct 25.
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Plant Phenotyping: An Active Vision Cell for Three-Dimensional Plant Shoot Reconstruction.植物表型分析:用于三维植物芽重建的主动视觉单元。
Plant Physiol. 2018 Oct;178(2):524-534. doi: 10.1104/pp.18.00664. Epub 2018 Aug 10.
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The Quantitative Genetic Control of Root Architecture in Maize.玉米根系构型的数量遗传控制。
Plant Cell Physiol. 2018 Oct 1;59(10):1919-1930. doi: 10.1093/pcp/pcy141.
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The Persistent Homology Mathematical Framework Provides Enhanced Genotype-to-Phenotype Associations for Plant Morphology.持久同调数学框架为植物形态提供了增强的基因型-表型关联。
Plant Physiol. 2018 Aug;177(4):1382-1395. doi: 10.1104/pp.18.00104. Epub 2018 Jun 5.