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泛癌分析确定含OB折叠的同源重组因子(HROB)为多种肿瘤类型的潜在生物标志物。

Pan-Cancer Analysis Identified Homologous Recombination Factor With OB-Fold (HROB) as a Potential Biomarker for Various Tumor Types.

作者信息

Liu Xianming, Wang Cunchuan

机构信息

Department of Gastrointestinal Surgery, Shenzhen People's Hospital, The Second Clinical Medical College of Jinan University, The First Affiliated Hospital of Southern University of Science and Technology, Shenzhen, China.

Department of Gastrointestinal Surgery, Guangzhou Overseas Chinese Hospital, The First Affiliated Hospital of Jinan University, Guangzhou, China.

出版信息

Front Genet. 2022 Jul 12;13:904060. doi: 10.3389/fgene.2022.904060. eCollection 2022.

Abstract

By recruiting the MCM8-MCM9 helicase to DNA damage site, the Homologous Recombination Factor With OB-Fold (HROB) is involved in the repair of inter-strand crosslink and homologous recombination. Previous studies have shown that HROB may play an oncogenic role by promoting cell proliferation and chemoresistance in several tumor types. However, the potential diagnostic and prognostic values of HROB have not been systemically explored in pan-cancer. We analyzed the expression pattern of HROB among tumor tissues and normal tissues in several public databases, including Human Protein Atlas and the Cancer Genome Atlas (TCGA) and investigated the association between the HROB expression and pathological stage and patient prognosis. We also analyzed the association between HROB expression and cancer stemness and immune infiltration of cancer-associated fibroblasts (CAFs) and CD8 T cells in pan-cancer. Finally, we explored the potential biological function of HROB through pathway enrichment analysis. In most tumor types, HROB is overexpressed in tumor tissues compared with non-tumor tissues. High HROB expression was correlated with poor prognosis and advanced pathological stages. HROB expression was robustly correlated with cancer stemness. Moreover, significant correlations between CAFs, CD8 T-cell infiltration, and HROB expression were observed in several tumor types. Pathway enrichment analysis revealed that cell cycle and mitotic-regulated pathways were strongly enriched in HROB co-expressed genes. HROB may be a potential diagnostic and prognostic biomarker in pan-cancer, which may play a role in tumorigenesis and disease progression by affecting the cancer stemness of tumor tissues and immune cell infiltration.

摘要

通过将MCM8-MCM9解旋酶招募到DNA损伤位点,含OB折叠的同源重组因子(HROB)参与链间交联修复和同源重组。先前的研究表明,HROB可能通过促进几种肿瘤类型的细胞增殖和化疗耐药性发挥致癌作用。然而,HROB在泛癌中的潜在诊断和预后价值尚未得到系统研究。我们分析了包括人类蛋白质图谱和癌症基因组图谱(TCGA)在内的多个公共数据库中肿瘤组织和正常组织中HROB的表达模式,并研究了HROB表达与病理分期及患者预后之间的关联。我们还分析了泛癌中HROB表达与癌症干性以及癌症相关成纤维细胞(CAF)和CD8 T细胞免疫浸润之间的关联。最后,我们通过通路富集分析探索了HROB的潜在生物学功能。在大多数肿瘤类型中,与非肿瘤组织相比,HROB在肿瘤组织中过表达。HROB高表达与预后不良和病理分期晚期相关。HROB表达与癌症干性密切相关。此外,在几种肿瘤类型中观察到CAF、CD8 T细胞浸润与HROB表达之间存在显著相关性。通路富集分析显示,细胞周期和有丝分裂调节通路在HROB共表达基因中强烈富集。HROB可能是泛癌中一种潜在的诊断和预后生物标志物,它可能通过影响肿瘤组织的癌症干性和免疫细胞浸润在肿瘤发生和疾病进展中发挥作用。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e329/9315351/9fb010041745/fgene-13-904060-g001.jpg

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