Wang Lin, Peng Chunyan, Gong Bin, Yang Zicong, Song Jingjing, Li Lu, Xu Lili, Yue Tao, Wang Xiaolin, Yang Mengping, Xu Huimin, Liu Xiong
The Guangxi Key Laboratory of Beibu Gulf Marine Biodiversity Conservation, College of Marine Sciences, Beibu Gulf University, Qinzhou, China.
Guangxi Key Laboratory of Marine Disaster in the Beibu Gulf, Beibu Gulf University, Qinzhou, China.
Front Microbiol. 2022 Jul 12;13:911408. doi: 10.3389/fmicb.2022.911408. eCollection 2022.
Weizhou Island and Xieyang Island are two large and young volcanic sea islands in the northern part of the South China Sea. In this study, high-throughput sequencing (HTS) of 16S rRNA genes was used to explore the diversity of Actinobacteria in the Weizhou and Xieyang Islands. Moreover, a traditional culture-dependent method was utilized to isolate Actinobacteria, and their antibacterial and cytotoxic activities were detected. The alpha diversity indices (ACE metric) of the overall bacterial communities for the larger island (Weizhou) were higher than those for the smaller island (Xieyang). A beta diversity analysis showed a more dispersive pattern of overall bacterial and actinobacterial communities on a larger island (Weizhou). At the order level, Frankiales, Propionibacteriales, Streptomycetales, Micrococcales, Pseudonocardiales, Micromonosporales, Glycomycetales, Corynebacteriales, and Streptosporangiales were the predominant Actinobacteria. A total of 22.7% of the OTUs shared 88%-95% similarity with some known groups. More interestingly, 15 OTUs formed a distinct and most predominant clade, and shared identities of less than 95% with any known families. This is the first report about this unknown group and their 16S rRNA sequences obtained from volcanic soils. A total of 268 actinobacterial strains were isolated by the culture-dependent method. Among them, 55 species were isolated, representing that 76.6% of the total and were the most abundant. Moreover, some rare Actinobacteria were isolated. These included spp., spp., spp., spp., spp., and spp. Among them, eight spp. exhibited antibacterial activity against . Only three strains inhibited the growth of . Four strains showed good activity against aquatic pathogenic bacterial strains of . The cytotoxicity assay results showed that 27 strains (10.07%) exhibited cytotoxic activity against HeLa and A549 cell lines. Many actinobacterial strains with cytotoxic activity were identified as rare Actinobacteria, which illustrated that volcanic islands are vast reservoirs for Actinobacteria with promising antibacterial and cytotoxic activity. This study may significantly improve our understanding of actinobacterial communities on volcanic islands. The isolated Actinobacteria showed promising prospects for future use.
涠洲岛和斜阳岛是南海北部两个大型的年轻火山海岛。在本研究中,利用16S rRNA基因的高通量测序(HTS)来探究涠洲岛和斜阳岛中放线菌的多样性。此外,采用传统的依赖培养的方法分离放线菌,并检测其抗菌和细胞毒性活性。较大岛屿(涠洲岛)总体细菌群落的α多样性指数(ACE指标)高于较小岛屿(斜阳岛)。β多样性分析表明,较大岛屿(涠洲岛)上总体细菌和放线菌群落的分布模式更为分散。在目水平上,弗兰克氏菌目、丙酸杆菌目、链霉菌目、微球菌目、假诺卡氏菌目、小单孢菌目、糖霉菌目、棒杆菌目和链孢囊菌目是主要的放线菌。共有22.7%的操作分类单元(OTUs)与一些已知类群具有88%-95%的相似性。更有趣的是,15个OTUs形成了一个独特且最主要的进化枝,与任何已知科的同源性均低于95%。这是关于这个未知类群及其从火山土壤中获得的16S rRNA序列的首次报道。通过依赖培养的方法共分离出268株放线菌菌株。其中,分离出55个物种,占总数的76.6%,是最丰富的。此外,还分离出一些稀有放线菌。这些包括[具体物种1]、[具体物种2]、[具体物种3]、[具体物种4]、[具体物种5]和[具体物种6]。其中,8株[具体物种7]对[具体病原菌]表现出抗菌活性。只有3株抑制了[具体病原菌]的生长。4株对[具体水生致病细菌菌株]表现出良好活性。细胞毒性试验结果表明,27株(10.07%)对HeLa和A549细胞系表现出细胞毒性活性。许多具有细胞毒性活性的放线菌菌株被鉴定为稀有放线菌,这表明火山岛是具有潜在抗菌和细胞毒性活性的放线菌的巨大储存库。本研究可能会显著提高我们对火山岛上放线菌群落的理解。分离出的放线菌显示出有前景的未来应用前景。