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利用生物信息学和功能研究鉴定出小窝蛋白-1 是急性肺损伤的关键介质。

Caveolin-1 identified as a key mediator of acute lung injury using bioinformatics and functional research.

机构信息

Department of Physiology, Hunan Normal University School of Medicine, Changsha, 410013, China.

Department of Pathogenic Biology, School of Basic Medical Sciences, Wuhan University, Wuhan, 430071, China.

出版信息

Cell Death Dis. 2022 Aug 6;13(8):686. doi: 10.1038/s41419-022-05134-8.

DOI:10.1038/s41419-022-05134-8
PMID:35933468
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9357074/
Abstract

Acute lung injury (ALI) is a potentially life-threatening, devastating disease with an extremely high rate of mortality. The underlying mechanism of ALI is currently unclear. In this study, we aimed to confirm the hub genes associated with ALI and explore their functions and molecular mechanisms using bioinformatics methods. Five microarray datasets available in GEO were used to perform Robust Rank Aggregation (RRA) to identify differentially expressed genes (DEGs) and the key genes were identified via the protein-protein interaction (PPI) network. Lipopolysaccharide intraperitoneal injection was administered to establish an ALI model. Overall, 40 robust DEGs, which are mainly involved in the inflammatory response, protein catabolic process, and NF-κB signaling pathway were identified. Among these DEGs, we identified two genes associated with ALI, of which the CAV-1/NF-κB axis was significantly upregulated in ALI, and was identified as one of the most effective targets for ALI prevention. Subsequently, the expression of CAV-1 was knocked down using AAV-shCAV-1 or CAV-1-siRNA to study its effect on the pathogenesis of ALI in vivo and in vitro. The results of this study indicated that CAV-1/NF-κB axis levels were elevated in vivo and in vitro, accompanied by an increase in lung inflammation and autophagy. The knockdown of CAV-1 may improve ALI. Mechanistically, inflammation was reduced mainly by decreasing the expression levels of CD3 and F4/80, and activating autophagy by inhibiting AKT/mTOR and promoting the AMPK signaling pathway. Taken together, this study provides crucial evidence that CAV-1 knockdown inhibits the occurrence of ALI, suggesting that the CAV-1/NF-κB axis may be a promising therapeutic target for ALI treatment.

摘要

急性肺损伤(ALI)是一种潜在危及生命的破坏性疾病,死亡率极高。ALI 的潜在机制目前尚不清楚。在这项研究中,我们旨在使用生物信息学方法确认与 ALI 相关的枢纽基因,并探讨其功能和分子机制。使用 GEO 中可用的五个微阵列数据集进行稳健秩聚合(RRA),以识别差异表达基因(DEGs),并通过蛋白质-蛋白质相互作用(PPI)网络鉴定关键基因。通过腹腔内注射脂多糖建立 ALI 模型。总体而言,鉴定出 40 个主要参与炎症反应、蛋白质分解代谢和 NF-κB 信号通路的稳健 DEGs。在这些 DEGs 中,我们鉴定出与 ALI 相关的两个基因,其中 CAV-1/NF-κB 轴在 ALI 中显著上调,并被确定为 ALI 预防的最有效靶点之一。随后,使用 AAV-shCAV-1 或 CAV-1-siRNA 敲低 CAV-1 的表达,以研究其对体内和体外 ALI 发病机制的影响。这项研究的结果表明,CAV-1/NF-κB 轴水平在体内和体外均升高,伴有肺炎症和自噬增加。CAV-1 的敲低可能改善 ALI。从机制上讲,炎症主要通过降低 CD3 和 F4/80 的表达水平,以及通过抑制 AKT/mTOR 和促进 AMPK 信号通路来激活自噬来减轻。综上所述,这项研究提供了重要证据,表明 CAV-1 敲低可抑制 ALI 的发生,提示 CAV-1/NF-κB 轴可能是治疗 ALI 的有前途的治疗靶点。

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