Huang Chenglong, Li Weikun, Zhang Zhongfu, Hua Xiangdong, Yang Junya, Ye Junli, Duan Lingfeng, Liang Xiuying, Yang Wanneng
National Key Laboratory of Crop Genetic Improvement, National Center of Plant Gene Research (Wuhan), College of Engineering, Huazhong Agricultural University, Wuhan, China.
Front Plant Sci. 2022 Jul 22;13:900408. doi: 10.3389/fpls.2022.900408. eCollection 2022.
High-throughput phenotyping of yield-related traits is meaningful and necessary for rice breeding and genetic study. The conventional method for rice yield-related trait evaluation faces the problems of rice threshing difficulties, measurement process complexity, and low efficiency. To solve these problems, a novel intelligent system, which includes an integrated threshing unit, grain conveyor-imaging units, threshed panicle conveyor-imaging unit, and specialized image analysis software has been proposed to achieve rice yield trait evaluation with high throughput and high accuracy. To improve the threshed panicle detection accuracy, the Region of Interest Align, Convolution Batch normalization activation with Leaky Relu module, Squeeze-and-Excitation unit, and optimal anchor size have been adopted to optimize the Faster-RCNN architecture, termed 'TPanicle-RCNN,' and the new model achieved F1 score 0.929 with an increase of 0.044, which was robust to indica and japonica varieties. Additionally, AI cloud computing was adopted, which dramatically reduced the system cost and improved flexibility. To evaluate the system accuracy and efficiency, 504 panicle samples were tested, and the total spikelet measurement error decreased from 11.44 to 2.99% with threshed panicle compensation. The average measuring efficiency was approximately 40 s per sample, which was approximately twenty times more efficient than manual measurement. In this study, an automatic and intelligent system for rice yield-related trait evaluation was developed, which would provide an efficient and reliable tool for rice breeding and genetic research.
产量相关性状的高通量表型分析对于水稻育种和遗传研究具有重要意义且必不可少。传统的水稻产量相关性状评估方法面临着水稻脱粒困难、测量过程复杂以及效率低下等问题。为了解决这些问题,提出了一种新型智能系统,该系统包括一个集成脱粒单元、谷粒输送成像单元、脱粒穗输送成像单元以及专门的图像分析软件,以实现高通量、高精度的水稻产量性状评估。为了提高脱粒穗检测精度,采用了感兴趣区域对齐、带泄漏整流线性单元的卷积批量归一化激活模块、挤压激励单元以及最优锚框尺寸来优化Faster-RCNN架构,称为“TPanicle-RCNN”,新模型的F1分数达到0.929,提高了0.044,对籼稻和粳稻品种都具有鲁棒性。此外,采用了人工智能云计算,大大降低了系统成本并提高了灵活性。为了评估系统的准确性和效率,对504个穗样本进行了测试,脱粒穗补偿后总小穗测量误差从11.44%降至2.99%。平均测量效率约为每个样本40秒,比人工测量效率提高了约20倍。在本研究中,开发了一种用于水稻产量相关性状评估的自动智能系统,这将为水稻育种和遗传研究提供一个高效可靠的工具。