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小麦(L.)中DNA去甲基化酶基因的鉴定、特征分析及其与热胁迫的关联

Identification and Characterization of DNA Demethylase Genes and Their Association With Thermal Stress in Wheat ( L.).

作者信息

Gahlaut Vijay, Samtani Harsha, Gautam Tinku, Khurana Paramjit

机构信息

Department of Plant Molecular Biology, University of Delhi, New Delhi, India.

CSIR-Institute of Himalayan Bioresource Technology, Palampur, India.

出版信息

Front Genet. 2022 Jul 22;13:894020. doi: 10.3389/fgene.2022.894020. eCollection 2022.

Abstract

DNA demethylases (dMTases) are essential proteins in plants that regulate DNA methylation levels. The dMTase genes have been explored in a number of plant species, however, members of this family have not been reported in wheat. We identified 12 wheat dMTase genes divided into two subfamilies: repressor of silencing 1 (ROS1) and DEMETER-Like (DML). The TadMTases in the same subfamily or clade in the phylogenetic tree have similar gene structures, protein motifs, and domains. The promoter sequence contains multiple -regulatory elements (CREs) that respond to abiotic stress, hormones, and light, suggesting that the majority of genes play a role in wheat growth, development, and stress response. The nuclear localization signals (NLSs), subcellular localization, and SRR motifs were also analyzed. The expression profile analyses revealed that genes showed differential gene expression patterns in distinct developmental stages and tissues as well as under heat stress (HS). Furthermore, the qRT-PCR analysis revealed that gene expression differed amongst wheat cultivars with varying degrees of HS tolerance. Overall, this work contributes to the understanding of the biological function of wheat dMTases and lays the foundation for future investigations.

摘要

DNA去甲基化酶(dMTases)是植物中调节DNA甲基化水平的重要蛋白质。dMTase基因已在许多植物物种中得到研究,然而,该家族成员在小麦中尚未见报道。我们鉴定出12个小麦dMTase基因,分为两个亚家族:沉默抑制因子1(ROS1)和类DEMETER(DML)。系统发育树中同一亚家族或分支中的TadMTases具有相似的基因结构、蛋白质基序和结构域。启动子序列包含多个响应非生物胁迫、激素和光的调控元件(CREs),这表明大多数基因在小麦生长、发育和胁迫响应中发挥作用。还分析了核定位信号(NLSs)、亚细胞定位和SRR基序。表达谱分析表明,基因在不同发育阶段、组织以及热胁迫(HS)下呈现出不同的基因表达模式。此外,qRT-PCR分析表明,基因表达在不同热胁迫耐受性的小麦品种中存在差异。总体而言,这项工作有助于理解小麦dMTases的生物学功能,并为未来的研究奠定基础。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2bb1/9355123/84e64ced19a9/fgene-13-894020-g001.jpg

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