机械解包裹核小体及其组装产物过程中结构转变的分配。
Assignment of structural transitions during mechanical unwrapping of nucleosomes and their disassembly products.
机构信息
Jason L. Choy Laboratory of Single-Molecule Biophysics, University of California, Berkeley, CA 94720.
California Institute for Quantitative Biosciences, University of California, Berkeley, CA 94720.
出版信息
Proc Natl Acad Sci U S A. 2022 Aug 16;119(33):e2206513119. doi: 10.1073/pnas.2206513119. Epub 2022 Aug 8.
Nucleosome DNA unwrapping and its disassembly into hexasomes and tetrasomes is necessary for genomic access and plays an important role in transcription regulation. Previous single-molecule mechanical nucleosome unwrapping revealed a low- and a high-force transitions, and force-FRET pulling experiments showed that DNA unwrapping is asymmetric, occurring always first from one side before the other. However, the assignment of DNA segments involved in these transitions remains controversial. Here, using high-resolution optical tweezers with simultaneous single-molecule FRET detection, we show that the low-force transition corresponds to the undoing of the outer wrap of one side of the nucleosome (∼27 bp), a process that can occur either cooperatively or noncooperatively, whereas the high-force transition corresponds to the simultaneous unwrapping of ∼76 bp from both sides. This process may give rise stochastically to the disassembly of nucleosomes into hexasomes and tetrasomes whose unwrapping/rewrapping trajectories we establish. In contrast, nucleosome rewrapping does not exhibit asymmetry. To rationalize all previous nucleosome unwrapping experiments, it is necessary to invoke that mechanical unwrapping involves two nucleosome reorientations: one that contributes to the change in extension at the low-force transition and another that coincides but does not contribute to the high-force transition.
核小体 DNA 的解缠绕及其组装成六聚体和四聚体对于基因组的可及性是必要的,并且在转录调控中发挥着重要作用。先前的单分子力学核小体解缠绕实验揭示了低力和高力转变,并且力-FRET 拉伸实验表明 DNA 解缠绕是不对称的,总是先从一侧开始,然后再从另一侧开始。然而,涉及这些转变的 DNA 片段的分配仍然存在争议。在这里,我们使用具有同时单分子 FRET 检测的高分辨率光学镊子,表明低力转变对应于核小体一侧的外缠绕的解开(约 27 bp),该过程可以协同或非协同地发生,而高力转变对应于同时从两侧解开约 76 bp。这个过程可能会随机导致核小体组装成六聚体和四聚体,我们建立了它们的解缠绕/重缠绕轨迹。相比之下,核小体重缠绕没有表现出不对称性。为了使所有以前的核小体解缠绕实验合理化,有必要假设力学解缠绕涉及两个核小体取向的改变:一个有助于在低力转变时的延伸变化,另一个与高力转变同时发生,但不贡献于高力转变。