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构建免疫相关特征并鉴定 S100A14 以确定胰腺癌中的免疫抑制微环境。

Construction of immune-related signature and identification of S100A14 determining immune-suppressive microenvironment in pancreatic cancer.

机构信息

Department of General Surgery, State Key Laboratory of Complex Severe and Rare Diseases, Peking Union Medical College Hospital, Chinese Academy of Medical Sciences, Peking Union Medical College, Beijing, 100023, PR China.

出版信息

BMC Cancer. 2022 Aug 11;22(1):879. doi: 10.1186/s12885-022-09927-0.

Abstract

Pancreatic cancer (PC) is a highly lethal and aggressive disease with its incidence and mortality quite discouraging. A robust prognostic signature and novel biomarkers are urgently needed for accurate stratification of the patients and optimization of clinical decision-making. Since the critical role of immune microenvironment in the progression of PC, a prognostic signature based on seven immune-related genes was established, which was validated in The Cancer Genome Atlas (TCGA) training set, TCGA testing set, TCGA entire set and GSE71729 set. Furthermore, S100A14 (S100 Calcium Binding Protein A14) was identified as the gene occupying the most paramount position in risk signature. According to the GSEA, CIBERSORT and ESTIMATE algorithm, S100A14 was mainly associated with lower proportion of CD8 + T cells and higher proportion of M0 macrophages in PC tissue. Meanwhile, analysis of single-cell dataset CRA001160 revealed a significant negative correlation between S100A14 expression in PC cells and CD8 + T cell infiltration, which was further confirmed by tissue microenvironment landscape imaging and machine learning-based analysis in our own PUMCH cohort. Additionally, analysis of a pan-pancreatic cancer cell line illustrated that S100A14 might inhibit CD8 + T cell activation via the upregulation of PD-L1 expression in PC cells, which was also verified by the immunohistochemical results of PUMCH cohort. Finally, tumor mutation burden analysis and immunophenoscore algorithm revealed that patients with high S100A14 expression had a higher probability of responding to immunotherapy. In conclusion, our study established an efficient immune-related prediction model and identified the potential role of S100A14 in regulating the immune microenvironment and serving as a biomarker for immunotherapy efficacy prediction.

摘要

胰腺癌(PC)是一种高度致命和侵袭性的疾病,其发病率和死亡率相当令人沮丧。迫切需要建立一个稳健的预后标志物和新的生物标志物,以便对患者进行准确分层和优化临床决策。由于免疫微环境在 PC 进展中的关键作用,建立了一个基于七个免疫相关基因的预后标志物,在 TCGA 训练集、TCGA 测试集、TCGA 全集中和 GSE71729 集中进行了验证。此外,S100A14(S100 钙结合蛋白 A14)被鉴定为风险标志物中占据最重要位置的基因。根据 GSEA、CIBERSORT 和 ESTIMATE 算法,S100A14 主要与 PC 组织中 CD8+T 细胞比例较低和 M0 巨噬细胞比例较高相关。同时,对单细胞数据集 CRA001160 的分析表明,S100A14 在 PC 细胞中的表达与 CD8+T 细胞浸润呈显著负相关,这在我们自己的 PUMCH 队列的组织微环境景观成像和基于机器学习的分析中得到了进一步证实。此外,对泛胰腺癌细胞系的分析表明,S100A14 可能通过上调 PC 细胞中 PD-L1 的表达来抑制 CD8+T 细胞的激活,这在 PUMCH 队列的免疫组化结果中也得到了验证。最后,肿瘤突变负担分析和免疫表型评分算法表明,S100A14 表达较高的患者对免疫治疗的反应可能性更高。总之,我们的研究建立了一个有效的免疫相关预测模型,并确定了 S100A14 在调节免疫微环境和作为免疫治疗疗效预测生物标志物方面的潜在作用。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2600/9367131/590e46c85f66/12885_2022_9927_Fig1_HTML.jpg

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