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使用鼻拭子样本混合策略通过实时聚合酶链反应检测严重急性呼吸综合征冠状病毒2

Severe acute respiratory syndrome coronavirus 2 detection by real time polymerase chain reaction using pooling strategy of nasal samples.

作者信息

Pratelli Annamaria, Pellegrini Francesco, Ceci Luigi, Tatò Daniela, Lucente Maria Stella, Capozzi Loredana, Camero Michele, Buonavoglia Alessio

机构信息

Department of Veterinary Medicine, University Aldo Moro of Bari, Valenzano, Italy.

Clinical Pathology and Microbiology, Hospital Bonomo, Andria, Italy.

出版信息

Front Microbiol. 2022 Jul 22;13:957957. doi: 10.3389/fmicb.2022.957957. eCollection 2022.

Abstract

COVID-19 is a life-threatening multisistemic infection caused by (SARS-CoV-2). Infection control relies on timely identification and isolation of infected people who can alberg the virus for up to 14 days, providing important opportunities for undetected transmission. This note describes the application of rRT-PCR test for simpler, faster and less invasive monitoring of SARS-CoV-2 infection using pooling strategy of samples. Seventeen positive patients were provided with sterile dry swabs and asked to self-collected 2 nasal specimens (#NS1 and #NS2). The #NS1 was individually placed in a single tube and the #NS2 was placed in another tube together with 19 NSs collected from 19 negative patients. Both tubes were then tested with conventional molecular rRT-PCR and the strength of pooling nasal testing was compared with the molecular test performed on the single NS of each positive patient. The pooling strategy detected SARS-CoV-2 RNA to a similar extent to the single test, even when Ct value is on average high (Ct 37-38), confirming that test sensibility is not substantially affected even if the pool contains only one low viral load positive sample. Furthermore, the pooling strategy have benefits for SARS-CoV-2 routinary monitoring of groups in regions with a low SARS-CoV-2 prevalence.

摘要

新型冠状病毒肺炎(COVID-19)是由严重急性呼吸综合征冠状病毒2(SARS-CoV-2)引起的危及生命的多系统感染。感染控制依赖于及时识别和隔离那些可能携带病毒长达14天的感染者,这为未被发现的传播提供了重要机会。本说明描述了逆转录实时荧光定量聚合酶链反应(rRT-PCR)检测在使用样本混合策略对SARS-CoV-2感染进行更简单、快速且侵入性较小的监测中的应用。为17名阳性患者提供了无菌干拭子,并要求他们自行采集2份鼻拭子样本(#NS1和#NS2)。#NS1单独置于一个试管中,#NS2与从19名阴性患者采集的19份鼻拭子一起置于另一个试管中。然后对两个试管都进行常规分子rRT-PCR检测,并将混合鼻拭子检测的效力与对每名阳性患者的单个鼻拭子进行的分子检测进行比较。即使当Ct值平均较高(Ct 37 - 38)时,混合策略检测SARS-CoV-2 RNA的程度与单个检测相似,这证实即使混合样本中仅包含一个低病毒载量的阳性样本,检测灵敏度也不会受到实质性影响。此外,混合策略对SARS-CoV-2流行率较低地区的群体进行常规监测具有益处。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f156/9361001/8f11a774dcf8/fmicb-13-957957-g001.jpg

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