Merck Center for Catalysis, Princeton University, Princeton, NJ 08544.
Discovery Chemistry, Merck & Co., Inc., Kenilworth, NJ 07033.
Proc Natl Acad Sci U S A. 2022 Aug 23;119(34):e2208077119. doi: 10.1073/pnas.2208077119. Epub 2022 Aug 15.
Over half of new therapeutic approaches fail in clinical trials due to a lack of target validation. As such, the development of new methods to improve and accelerate the identification of cellular targets, broadly known as target ID, remains a fundamental goal in drug discovery. While advances in sequencing and mass spectrometry technologies have revolutionized drug target ID in recent decades, the corresponding chemical-based approaches have not changed in over 50 y. Consigned to outdated stoichiometric activation modes, modern target ID campaigns are regularly confounded by poor signal-to-noise resulting from limited receptor occupancy and low crosslinking yields, especially when targeting low abundance membrane proteins or multiple protein target engagement. Here, we describe a broadly general platform for photocatalytic small molecule target ID, which is founded upon the catalytic amplification of target-tag crosslinking through the continuous generation of high-energy carbene intermediates via visible light-mediated Dexter energy transfer. By decoupling the reactive warhead tag from the small molecule ligand, catalytic signal amplification results in unprecedented levels of target enrichment, enabling the quantitative target and off target ID of several drugs including (+)-JQ1, paclitaxel (Taxol), dasatinib (Sprycel), as well as two G-protein-coupled receptors-ADORA2A and GPR40.
由于缺乏靶标验证,超过一半的新治疗方法在临床试验中失败。因此,开发新的方法来改进和加速细胞靶标的鉴定,通常被称为靶标 ID,仍然是药物发现的一个基本目标。尽管测序和质谱技术的进步在最近几十年彻底改变了药物靶标 ID,但相应的基于化学的方法在 50 多年来没有变化。由于受体占有率有限和交联产率低,导致信号噪声比差,特别是在针对低丰度膜蛋白或多个蛋白质靶标结合时,现代靶标 ID 研究经常受到限制。在这里,我们描述了一种广泛通用的光催化小分子靶标 ID 平台,该平台基于通过可见光介导的 Dexter 能量转移连续生成高能卡宾中间体来催化靶标标记交联的放大。通过将反应性弹头标签与小分子配体解耦,催化信号放大导致靶标富集达到前所未有的水平,从而能够对包括(+)-JQ1、紫杉醇(Taxol)、达沙替尼(Sprycel)以及两种 G 蛋白偶联受体 ADORA2A 和 GPR40 在内的几种药物进行定量靶标和脱靶标 ID。