INRAE, Oniris, BIOEPAR, 44300 Nantes, France.
INRAE, Oniris, BIOEPAR, 44300 Nantes, France.
Epidemics. 2022 Sep;40:100615. doi: 10.1016/j.epidem.2022.100615. Epub 2022 Jul 27.
Robust epidemiological knowledge and predictive modelling tools are needed to address challenging objectives, such as: understanding epidemic drivers; forecasting epidemics; and prioritising control measures. Often, multiple modelling approaches can be used during an epidemic to support effective decision making in a timely manner. Modelling challenges contribute to understanding the pros and cons of different approaches and to fostering technical dialogue between modellers. In this paper, we present the results of the first modelling challenge in animal health - the ASF Challenge - which focused on a synthetic epidemic of African swine fever (ASF) on an island. The modelling approaches proposed by five independent international teams were compared. We assessed their ability to predict temporal and spatial epidemic expansion at the interface between domestic pigs and wild boar, and to prioritise a limited number of alternative interventions. We also compared their qualitative and quantitative spatio-temporal predictions over the first two one-month projection phases of the challenge. Top-performing models in predicting the ASF epidemic differed according to the challenge phase, host species, and in predicting spatial or temporal dynamics. Ensemble models built using all team-predictions outperformed any individual model in at least one phase. The ASF Challenge demonstrated that accounting for the interface between livestock and wildlife is key to increasing our effectiveness in controlling emerging animal diseases, and contributed to improving the readiness of the scientific community to face future ASF epidemics. Finally, we discuss the lessons learnt from model comparison to guide decision making.
需要强有力的流行病学知识和预测建模工具来应对具有挑战性的目标,例如:了解传染病驱动因素;预测传染病;以及确定控制措施的优先级。通常,在传染病期间可以使用多种建模方法,以便及时有效地做出决策。建模挑战有助于了解不同方法的优缺点,并促进建模者之间的技术对话。在本文中,我们介绍了动物健康领域的第一次建模挑战——ASF 挑战赛的结果,该挑战赛专注于非洲猪瘟 (ASF) 在一个岛屿上的合成疫情。比较了五个独立国际团队提出的建模方法。我们评估了它们在预测家猪和野猪之间的界面上传染病时空扩展的能力,并确定了有限数量的替代干预措施的优先级。我们还比较了它们在挑战赛的前两个为期一个月的预测阶段中的定性和定量时空预测。在预测 ASF 疫情方面表现最好的模型因挑战阶段、宿主物种以及预测空间或时间动态而异。在至少一个阶段中,使用所有团队预测构建的集成模型的表现均优于任何单个模型。ASF 挑战赛表明,考虑到牲畜和野生动物之间的界面是提高我们控制新发动物疾病的有效性的关键,并有助于提高科学界应对未来 ASF 疫情的准备程度。最后,我们讨论了从模型比较中汲取的经验教训,以指导决策。