Nurputra Dian Kesumapramudya, Kusumaatmaja Ahmad, Hakim Mohamad Saifudin, Hidayat Shidiq Nur, Julian Trisna, Sumanto Budi, Mahendradhata Yodi, Saktiawati Antonia Morita Iswari, Wasisto Hutomo Suryo, Triyana Kuwat
Department of Child Health, Faculty of Medicine, Public Health and Nursing, Universitas Gadjah Mada, Jl. Farmako Sekip Utara, Yogyakarta, 55281, Indonesia.
Postgraduate Program in Clinical Medicine Science, Faculty of Medicine, Public Health and Nursing, Universitas Gadjah Mada, Jl. Farmako Sekip Utara, Yogyakarta, 55281, Indonesia.
NPJ Digit Med. 2022 Aug 16;5(1):115. doi: 10.1038/s41746-022-00661-2.
The reverse transcription-quantitative polymerase chain reaction (RT-qPCR) approach has been widely used to detect the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2). However, instead of using it alone, clinicians often prefer to diagnose the coronavirus disease 2019 (COVID-19) by utilizing a combination of clinical signs and symptoms, laboratory test, imaging measurement (e.g., chest computed tomography scan), and multivariable clinical prediction models, including the electronic nose. Here, we report on the development and use of a low cost, noninvasive method to rapidly sniff out COVID-19 based on a portable electronic nose (GeNose C19) integrating an array of metal oxide semiconductor gas sensors, optimized feature extraction, and machine learning models. This approach was evaluated in profiling tests involving a total of 615 breath samples composed of 333 positive and 282 negative samples. The samples were obtained from 43 positive and 40 negative COVID-19 patients, respectively, and confirmed with RT-qPCR at two hospitals located in the Special Region of Yogyakarta, Indonesia. Four different machine learning algorithms (i.e., linear discriminant analysis, support vector machine, stacked multilayer perceptron, and deep neural network) were utilized to identify the top-performing pattern recognition methods and to obtain a high system detection accuracy (88-95%), sensitivity (86-94%), and specificity (88-95%) levels from the testing datasets. Our results suggest that GeNose C19 can be considered a highly potential breathalyzer for fast COVID-19 screening.
逆转录定量聚合酶链反应(RT-qPCR)方法已被广泛用于检测严重急性呼吸综合征冠状病毒2(SARS-CoV-2)。然而,临床医生通常不单独使用该方法,而是更倾向于通过综合临床体征和症状、实验室检查、影像学测量(如胸部计算机断层扫描)以及多变量临床预测模型(包括电子鼻)来诊断2019冠状病毒病(COVID-19)。在此,我们报告了一种低成本、非侵入性方法的开发与应用,该方法基于集成了金属氧化物半导体气体传感器阵列、优化特征提取和机器学习模型的便携式电子鼻(GeNose C19),能够快速检测出COVID-19。我们在总共615份呼吸样本的分析测试中对该方法进行了评估,这些样本包括333份阳性样本和282份阴性样本。样本分别来自印度尼西亚日惹特区两家医院的43名COVID-19阳性患者和40名阴性患者,并通过RT-qPCR进行了确认。我们利用四种不同的机器学习算法(即线性判别分析、支持向量机、堆叠多层感知器和深度神经网络)来确定表现最佳的模式识别方法,并从测试数据集中获得了较高的系统检测准确率(88%-95%)、灵敏度(86%-94%)和特异性(88%-95%)。我们的结果表明,GeNose C19可被视为一种用于快速COVID-19筛查的极具潜力的呼吸分析仪。