在图马莫克山沙漠实验室分离的两种温和型枯草芽孢杆菌噬菌体的全基因组序列
Complete Genome Sequences of Two Temperate Bacillus subtilis Phages Isolated at Tumamoc Hill Desert Laboratory.
作者信息
Krukonis Greg P, Kemp Amanda K, Storrie Katie F, Chavira Vivian R, Lantrip Hayden W, Perez Victoria D, Reyes Desiree A, Truax Julian A, Loney Rachel, Delesalle Véronique A
机构信息
Department of Biology, Angelo State University, San Angelo, Texas, USA.
Department of Biology, Gettysburg College, Gettysburg, Pennsylvania, USA.
出版信息
Microbiol Resour Announc. 2022 Sep 15;11(9):e0045522. doi: 10.1128/mra.00455-22. Epub 2022 Aug 17.
Abstract
Bacteriophages are important in structuring bacterial communities, including desert soils dominated by species. Here, we describe two genetically similar temperate phages isolated on a Bacillus subtilis strain from soil in Tucson, Arizona. Their double-stranded DNA (dsDNA) genomes contain 98 and 102 genes, with a set of 4 genes being found in only one phage.
摘要
噬菌体在构建细菌群落中起着重要作用，包括以特定物种为主导的沙漠土壤中的细菌群落。在这里，我们描述了从亚利桑那州图森市土壤中的一株枯草芽孢杆菌分离出的两种基因相似的温和噬菌体。它们的双链DNA（dsDNA）基因组包含98和102个基因，其中一组4个基因仅在一种噬菌体中发现。
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2
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Sci Rep. 2017 Aug 15;7(1):8292. doi: 10.1038/s41598-017-07910-5.
3
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Evolution. 1995 Dec;49(6):1081-1094. doi: 10.1111/j.1558-5646.1995.tb04435.x.
4
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