T-LOCked in: Identifying T-DNA insertions in plant genomes.
作者信息
Mason G Alex
机构信息
Department of Plant Biology and Genome Center, University of California, Davis, California 95616, USA.
出版信息
Plant Physiol. 2022 Oct 27;190(3):1547-1549. doi: 10.1093/plphys/kiac365.
Abstract
摘要
相似文献
1
T-LOCked in: Identifying T-DNA insertions in plant genomes.锁定：鉴定植物基因组中的T-DNA插入
Plant Physiol. 2022 Oct 27;190(3):1547-1549. doi: 10.1093/plphys/kiac365.
2
The complex architecture and epigenomic impact of plant T-DNA insertions.植物 T-DNA 插入的复杂结构和表观基因组影响。
PLoS Genet. 2019 Jan 18;15(1):e1007819. doi: 10.1371/journal.pgen.1007819. eCollection 2019 Jan.
3
Restriction site extension PCR: a novel method for high-throughput characterization of tagged DNA fragments and genome walking.限制酶切位点延伸 PCR：一种高通量鉴定标记 DNA 片段和基因组步移的新方法。
PLoS One. 2010 May 11;5(5):e10577. doi: 10.1371/journal.pone.0010577.
4
A comprehensive characterization of single-copy T-DNA insertions in the Arabidopsis thaliana genome.拟南芥基因组中单拷贝T-DNA插入的全面表征。
Plant Mol Biol. 2003 May;52(1):161-76. doi: 10.1023/a:1023929630687.
5
Functional genomics in Arabidopsis: large-scale insertional mutagenesis complements the genome sequencing project.拟南芥中的功能基因组学：大规模插入诱变补充了基因组测序计划。
Curr Opin Biotechnol. 2000 Apr;11(2):157-61. doi: 10.1016/s0958-1669(00)00075-6.
6
Distribution of 1000 sequenced T-DNA tags in the Arabidopsis genome.1000个测序T-DNA标签在拟南芥基因组中的分布。
Plant J. 2002 Oct;32(2):233-42. doi: 10.1046/j.1365-313x.2002.01417.x.
7
Genome-wide insertional mutagenesis of Arabidopsis thaliana.拟南芥的全基因组插入诱变
Science. 2003 Aug 1;301(5633):653-7. doi: 10.1126/science.1086391.
8
A non-canonical transferred DNA insertion at the BRI1 locus in Arabidopsis thaliana.拟南芥 BRI1 基因座的非规范转移 DNA 插入。
J Integr Plant Biol. 2009 Apr;51(4):367-73. doi: 10.1111/j.1744-7909.2009.00821.x.
9
Species-specific double-strand break repair and genome evolution in plants.植物中物种特异性双链断裂修复与基因组进化
EMBO J. 2000 Oct 16;19(20):5562-6. doi: 10.1093/emboj/19.20.5562.
10
[Identifying T-DNA insertion site(s) of transgenic plants by whole-genome resequencing].[通过全基因组重测序鉴定转基因植物的T-DNA插入位点]
Yi Chuan. 2018 Aug 16;40(8):676-682. doi: 10.16288/j.yczz.18-080.
本文引用的文献
1
T-LOC: A comprehensive tool to localize and characterize T-DNA integration sites.T-LOC：一种用于定位和表征 T-DNA 整合位点的综合工具。
Plant Physiol. 2022 Oct 27;190(3):1628-1639. doi: 10.1093/plphys/kiac225.
2
Large scale genomic rearrangements in selected Arabidopsis thaliana T-DNA lines are caused by T-DNA insertion mutagenesis.在选定的拟南芥 T-DNA 品系中，大规模基因组重排是由 T-DNA 插入诱变引起的。
BMC Genomics. 2021 Aug 6;22(1):599. doi: 10.1186/s12864-021-07877-8.
3
TDNAscan: A Software to Identify Complete and Truncated T-DNA Insertions.TDNAscan：一款用于识别完整和截短型T-DNA插入的软件。
Front Genet. 2019 Jul 25;10:685. doi: 10.3389/fgene.2019.00685. eCollection 2019.
4
The Structural Features of Thousands of T-DNA Insertion Sites Are Consistent with a Double-Strand Break Repair-Based Insertion Mechanism.成千上万的 T-DNA 插入位点的结构特征与基于双链断裂修复的插入机制一致。
Mol Plant. 2015 Nov 2;8(11):1651-64. doi: 10.1016/j.molp.2015.08.011. Epub 2015 Sep 5.
5
Linking genotype to phenotype using the Arabidopsis unimutant collection.利用拟南芥单突变体群体将基因型与表型联系起来。
Plant J. 2010 Mar;61(6):928-40. doi: 10.1111/j.1365-313X.2010.04119.x.
6
T-DNA-mediated transfer of Agrobacterium tumefaciens chromosomal DNA into plants.根癌农杆菌染色体DNA的T-DNA介导转移至植物中。
Nat Biotechnol. 2008 Sep;26(9):1015-7. doi: 10.1038/nbt.1491.
7
T-DNA insertional mutagenesis for functional genomics in rice.用于水稻功能基因组学研究的T-DNA插入诱变
Plant J. 2000 Jun;22(6):561-70. doi: 10.1046/j.1365-313x.2000.00767.x.
8
Single-copy T-DNA insertions in Arabidopsis are the predominant form of integration in root-derived transgenics, whereas multiple insertions are found in leaf discs.拟南芥中的单拷贝T-DNA插入是根衍生转基因中整合的主要形式，而在叶圆片中发现多拷贝插入。
Plant Mol Biol. 1993 Nov;23(4):847-60. doi: 10.1007/BF00021539.
Zotero 插件