Image-Guided Surgery Group, Research Centre of Biomedical Technology and Robotics (RCBTR), Tehran University of Medical Sciences, Tehran, Iran; Medical Physics and Biomedical Engineering Department, Faculty of Medicine, Tehran University of Medical Sciences (TUMS), Iran.
Research Center for Molecular and Cellular Imaging, Advanced Medical Technologies and Equipment Institute (AMTEI), Tehran University of Medical Sciences, Tehran, Iran; School of Cognitive Sciences, Institute for Research in Fundamental Sciences (IPM), Tehran, Iran.
Comput Biol Med. 2022 Sep;148:105917. doi: 10.1016/j.compbiomed.2022.105917. Epub 2022 Aug 1.
Glioma segmentation is an essential step in tumor identification and treatment planning. Glioma segmentation is a challenging task because it appears with blurred and irregular boundaries in a variety of shapes. In this paper, we propose an efficient and novel model for automatic glioma segmentation based on capsule neural networks. We improved the architecture and training of the SegCaps model, the first capsule-based segmentation network. The proposed architecture is improved by introducing dilation blocks in the primary capsule block to get deeper features while avoiding resolution reduction. The prediction layer of the network is also modified using one-dimensional convolution filters, enabling the network to not only maximize tumor existence likelihood but also regularize the capsule orientations within the tumor. Our main contribution, however, is to introduce an enhanced curriculum-based training algorithm into the proposed SegCaps model. We adapt the curriculum learning for the model by suggesting a new pacing mechanism based on a roulette-wheel selection algorithm that enriches randomness in the network and prevents bias. A hybrid dice loss function is also employed, which is better adapted to the introduced curriculum-based training procedure. We evaluated the performance of improved SegCaps on the BraTS2020, a multimodal benchmark dataset for brain tumor segmentation. The experimental results confirmed that the improvements yield a top-performing yet memory-efficient deep capsule architecture. The proposed model outperformed the best-reported accuracies on the BraTS2020, achieving improved dice scores of 85.16% and 81.88% for tumor core and enhancing tumor segmentation, respectively. Using 90%, fewer parameters than the popular U-Net also confirmed the high memory efficiency of our proposed model.
脑胶质瘤分割是肿瘤识别和治疗计划的重要步骤。脑胶质瘤分割是一项具有挑战性的任务,因为它在各种形状下呈现出模糊和不规则的边界。在本文中,我们提出了一种基于胶囊神经网络的自动脑胶质瘤分割的有效且新颖的模型。我们改进了 SegCaps 模型的架构和训练,SegCaps 模型是第一个基于胶囊的分割网络。所提出的架构通过在主要胶囊块中引入扩张块得到了改进,在避免分辨率降低的同时获得了更深的特征。网络的预测层也使用一维卷积滤波器进行了修改,使网络不仅能够最大化肿瘤存在的可能性,还能对肿瘤内的胶囊方向进行正则化。然而,我们的主要贡献是将一种增强的基于课程的训练算法引入到所提出的 SegCaps 模型中。我们通过基于轮盘赌选择算法提出了一种新的起搏机制来适应模型的课程学习,这种机制丰富了网络中的随机性,防止了偏差。还采用了混合 Dice 损失函数,该函数更适应所引入的基于课程的训练过程。我们在 BraTS2020 上评估了改进后的 SegCaps 的性能,BraTS2020 是一个用于脑肿瘤分割的多模态基准数据集。实验结果证实,改进后的 SegCaps 具有出色的性能和高效的记忆能力,是一种深度胶囊架构。该模型在 BraTS2020 上的表现优于最佳报道的精度,分别在肿瘤核心和增强肿瘤分割方面达到了 85.16%和 81.88%的改进 Dice 分数。使用 90%的参数比流行的 U-Net 还少,这也证实了我们提出的模型具有较高的记忆效率。