Draft Genome Sequence of the Multiple Antibiotic Resistant Pseudomonas aeruginosa PAO1-UB Subline.
作者信息
Chua Kah-Ooi, Norton Paul, Trus Pavlos, Katsikogianni Maria, Thornton M Julie, Chan Kok-Gan, Chang Chien-Yi
机构信息
Centre for Research in Biotechnology for Agriculture, University of Malaya, Kuala Lumpur, Malaysia.
Centre for Skin Sciences, Faculty of Life Sciences, University of Bradford, Bradford, United Kingdom.
出版信息
Microbiol Resour Announc. 2022 Sep 15;11(9):e0064622. doi: 10.1128/mra.00646-22. Epub 2022 Aug 22.
Abstract
We report the draft genome sequence and antibiotic susceptibility of Pseudomonas aeruginosa strain PAO1-UB, a subline of the common reference strain PAO1. This strain was sequenced in order to provide information on the genome dynamics of PAO1 sublines and their genes conferring resistance to multiple antibiotics.
摘要
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本文引用的文献
1
Current Knowledge and Future Directions in Developing Strategies to Combat Pseudomonas aeruginosa Infection.
J Mol Biol. 2020 Sep 18;432(20):5509-5528. doi: 10.1016/j.jmb.2020.07.021. Epub 2020 Aug 2.
2
Using SPAdes De Novo Assembler.
Curr Protoc Bioinformatics. 2020 Jun;70(1):e102. doi: 10.1002/cpbi.102.
3
CARD 2020: antibiotic resistome surveillance with the comprehensive antibiotic resistance database.
Nucleic Acids Res. 2020 Jan 8;48(D1):D517-D525. doi: 10.1093/nar/gkz935.
4
Genomic and Phenotypic Diversity among Ten Laboratory Isolates of PAO1.
J Bacteriol. 2019 Feb 11;201(5). doi: 10.1128/JB.00595-18. Print 2019 Mar 1.
5
NCBI prokaryotic genome annotation pipeline.
Nucleic Acids Res. 2016 Aug 19;44(14):6614-24. doi: 10.1093/nar/gkw569. Epub 2016 Jun 24.
6
BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs.
Bioinformatics. 2015 Oct 1;31(19):3210-2. doi: 10.1093/bioinformatics/btv351. Epub 2015 Jun 9.
7
Prokka: rapid prokaryotic genome annotation.
Bioinformatics. 2014 Jul 15;30(14):2068-9. doi: 10.1093/bioinformatics/btu153. Epub 2014 Mar 18.
8
Genome diversity of Pseudomonas aeruginosa PAO1 laboratory strains.
J Bacteriol. 2010 Feb;192(4):1113-21. doi: 10.1128/JB.01515-09. Epub 2009 Dec 18.
9
Genetic recombination in Pseudomonas aeruginosa.
J Gen Microbiol. 1955 Dec;13(3):572-81. doi: 10.1099/00221287-13-3-572.
10
Genome organization in Pseudomonas.
Annu Rev Microbiol. 1986;40:79-105. doi: 10.1146/annurev.mi.40.100186.000455.
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