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N6-甲基腺苷调节因子 RBM15B 作为独立的预后生物标志物及其在葡萄膜黑色素瘤中的临床意义。

N-Methyladenosine regulator RBM15B acts as an independent prognostic biomarker and its clinical significance in uveal melanoma.

机构信息

Department of Ophthalmology, Shanghai Tenth People's Hospital of Tongji University, Tongji University School of Medicine, Shanghai, China.

出版信息

Front Immunol. 2022 Aug 8;13:918522. doi: 10.3389/fimmu.2022.918522. eCollection 2022.

Abstract

Uveal melanoma (UM) is the most frequent intraocular malignant tumor in adults. N-Methyladenosine (mA) methylation is recognized as the most critical epigenetic change and is implicated in the development of many malignancies. However, its prognostic value in UM is poorly understood. RNA-seq and clinical data from The Cancer Genome Atlas (TCGA) help us better understand the relationship between mA regulators and UM patients. Herein, four UM groups established by consensus clustering were shown to have different immune cell infiltrations and prognostic survival. Five mA regulators, including RBM15B, IGF2BP1, IGF2BP2, YTHDF3, and YTHDF1, were associated with the prognosis of UM patients. Intriguingly, RBM15B was confirmed to be the only independent prognostic factor for UM and it was significantly correlated with clinicopathologic characteristics of UM. Notably, expression was significantly negatively correlated with immune checkpoints. Furthermore, LINC00665/hsa-let-7b-5p/RBM15B axis and LINC00638/hsa-miR-103a-3p/RBM15B axis were found to be potential prognostic biomarkers in UM. In a nutshell, this work, through bioinformatics analysis, systematically described the gene signatures and prognostic values of mA regulators. RBM15B is an independent protective prognostic factor, which may help us better understand the crosstalk within UM.

摘要

葡萄膜黑色素瘤(UM)是成年人中最常见的眼内恶性肿瘤。N6-甲基腺苷(mA)甲基化被认为是最关键的表观遗传改变,与许多恶性肿瘤的发生有关。然而,其在 UM 中的预后价值尚不清楚。RNA-seq 和来自癌症基因组图谱(TCGA)的临床数据帮助我们更好地了解 mA 调节剂与 UM 患者之间的关系。在此,通过共识聚类确定的四个 UM 组显示出不同的免疫细胞浸润和预后生存。五种 mA 调节剂,包括 RBM15B、IGF2BP1、IGF2BP2、YTHDF3 和 YTHDF1,与 UM 患者的预后相关。有趣的是,RBM15B 被证实是 UM 的唯一独立预后因素,它与 UM 的临床病理特征显著相关。值得注意的是,表达与免疫检查点呈显著负相关。此外,还发现 LINC00665/hsa-let-7b-5p/RBM15B 轴和 LINC00638/hsa-miR-103a-3p/RBM15B 轴可能是 UM 的潜在预后生物标志物。简而言之,这项工作通过生物信息学分析,系统地描述了 mA 调节剂的基因特征和预后价值。RBM15B 是一个独立的保护预后因素,它可能有助于我们更好地理解 UM 内部的串扰。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9b64/9393712/376af8e8db11/fimmu-13-918522-g001.jpg

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