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从植物源代谢产物中鉴定新型烯酰-酰基载体蛋白还原酶(InhA)抑制剂:一项计算机模拟研究

Identification of Novel Inhibitor of Enoyl-Acyl Carrier Protein Reductase (InhA) Enzyme in from Plant-Derived Metabolites: An In Silico Study.

作者信息

Singh Kratika, Pandey Niharika, Ahmad Firoz, Upadhyay Tarun Kumar, Islam Mohammad Hayatul, Alshammari Nawaf, Saeed Mohd, Al-Keridis Lamya Ahmed, Sharma Rolee

机构信息

Department of Biosciences, Integral University, IIRC-3, Kursi Road, Lucknow 226026, Uttar Pradesh, India.

Department of Biotechnology, Parul Institute of Applied Sciences and Animal Cell Culture and Immunobiochemistry Lab, Centre of Research for Development, Parul University, Vadodara 391760, Gujarat, India.

出版信息

Antibiotics (Basel). 2022 Aug 1;11(8):1038. doi: 10.3390/antibiotics11081038.

Abstract

(.) enoyl-acyl carrier protein (ACP) reductase (InhA) is validated as a useful target for tuberculosis therapy and is considered an attractive enzyme to drug discovery. This study aimed to identify the novel inhibitor of the InhA enzyme, a potential target of . involved in the type II fatty acid biosynthesis pathway that controls mycobacterial cell envelope synthesis. We compiled 80 active compounds from and citrus plants belonging to the Rutaceae family for pharmacokinetics and molecular docking analyses. The chemical structures of the 80 phytochemicals and the 3D structure of the target protein were retrieved from the PubChem database and RCSB Protein Data Bank, respectively. The evaluation of druglikeness was performed based on Lipinski's Rule of Five, while the computed phytochemical properties and molecular descriptors were used to predict the ADMET of the compounds. Amongst these, 11 pharmacokinetically-screened compounds were further examined by performing molecular docking analysis with an InhA target using AutoDock 4.2. The docking results showed that gravacridonediol, a major glycosylated natural alkaloid from , might possess a promising inhibitory potential against InhA, with a binding energy (B.E.) of -10.80 kcal/mole and inhibition constant (Ki) of 600.24 nM. These contrast those of the known inhibitor triclosan, which has a B.E. of -6.69 kcal/mole and Ki of 12.43 µM. The binding efficiency of gravacridonediol was higher than that of the well-known inhibitor triclosan against the InhA target. The present study shows that the identified natural compound gravacridonediol possesses drug-like properties and also holds promise in inhibiting InhA, a key target enzyme of

摘要

烯酰-酰基载体蛋白(ACP)还原酶(InhA)已被确认为结核病治疗的有效靶点,并且被认为是药物研发中具有吸引力的一种酶。本研究旨在鉴定InhA酶的新型抑制剂,InhA是参与II型脂肪酸生物合成途径的一个潜在靶点,该途径控制分枝杆菌细胞壁的合成。我们从芸香科的花椒属和柑橘属植物中收集了80种活性化合物进行药代动力学和分子对接分析。分别从PubChem数据库和RCSB蛋白质数据库中检索了这80种植物化学物质的化学结构和目标蛋白的三维结构。基于Lipinski的五规则进行类药性评估,同时使用计算得到的植物化学性质和分子描述符来预测化合物的ADMET。其中,对11种经过药代动力学筛选的化合物,使用AutoDock 4.2与InhA靶点进行分子对接分析,作进一步研究。对接结果表明,来自花椒属的主要糖基化天然生物碱重楼二醇可能对InhA具有有前景的抑制潜力,结合能(B.E.)为-10.80千卡/摩尔,抑制常数(Ki)为600.24纳摩尔。这些结果与已知抑制剂三氯生形成对比,三氯生的结合能为-6.69千卡/摩尔,抑制常数为12.43微摩尔。重楼二醇对InhA靶点的结合效率高于著名抑制剂三氯生。本研究表明,所鉴定的天然化合物重楼二醇具有类药性质,并且在抑制InhA方面也具有前景,InhA是……的关键靶点酶

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7ff3/9405319/7f4d0307da93/antibiotics-11-01038-g004.jpg

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