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基于 DPP4 抑制作用的计算机辅助筛选抗糖尿病植物化合物:分子对接、分子动力学和药代动力学方法的结合。

Computer-Aided Screening of Phytoconstituents from against Diabetes Mellitus Targeting DPP4 Inhibition: A Combination of Molecular Docking, Molecular Dynamics, and Pharmacokinetics Approaches.

机构信息

Department of Biotechnology and Bioinformatics, JSS Academy of Higher Education and Research, Mysuru 570015, India.

Department of Pharmacology, JSS Medical College, JSS Academy of Higher Education and Research, Mysuru 570015, India.

出版信息

Molecules. 2022 Aug 12;27(16):5133. doi: 10.3390/molecules27165133.

Abstract

Diabetes mellitus is a major global health concern in the current scenario which is chiefly characterized by the rise in blood sugar levels or hyperglycemia. In the context, DPP4 enzyme plays a critical role in glucose homeostasis. DPP4 targets and inactivates incretin hormones such as glucagon-like peptide-1 (GLP-1) and gastric inhibitory polypeptide (GIP) as physiological substrates, which are essential to regulate the amount of insulin that is secreted after eating. Since the inactivation of incretins occurs, the hyperglycemic conditions continue to rise, and result in adverse physiological conditions linked with diabetes mellitus. Hence, inhibition of DPP4 has been the center of focus in the present antidiabetic studies. Although few DPP4 inhibitor drugs, such as alogliptin, saxagliptin, linagliptin, and sitagliptin, are available, their adverse effects on human metabolism are undeniable. Therefore, it becomes essential for the phytochemical intervention of the disease using computational methods prior to performing in vitro and in vivo studies. In this regard, we used an in-silico approach involving molecular docking, molecular dynamics simulations, and binding free energy calculations to investigate the inhibitory potential of phytocompounds against DPP4. In this regard, three phytocompounds (1S-α-pinene, β-pinene, and dehydro--cymene) from have been discovered as the potential inhibitors of the DPP4 protein. To summarize, from our in-silico experiment outcomes, we propose dehydro--cymene as the potential lead inhibitor of DPP4 protein, thereby discovering new a phytocompound for the effective management of hyperglycemia and diabetes mellitus. The reported compound can be taken for in vitro and in vivo analyses in near future.

摘要

糖尿病是当前全球主要的健康关注点,其主要特征是血糖水平或高血糖升高。在这种情况下,DPP4 酶在葡萄糖稳态中起着关键作用。DPP4 靶向并使肠降血糖素样肽-1 (GLP-1) 和胃抑制多肽 (GIP) 等生理底物失活,这些底物对于调节进食后胰岛素的分泌量至关重要。由于肠降血糖素失活,高血糖状况继续上升,导致与糖尿病相关的不良生理状况。因此,抑制 DPP4 一直是当前抗糖尿病研究的重点。尽管有几种 DPP4 抑制剂药物,如阿格列汀、沙格列汀、利拉格列汀和西他列汀,但它们对人体代谢的不良反应是不可否认的。因此,在进行体外和体内研究之前,使用计算方法对疾病进行植物化学干预变得至关重要。在这方面,我们使用了一种涉及分子对接、分子动力学模拟和结合自由能计算的计算方法,来研究植物化合物对 DPP4 的抑制潜力。在这方面,我们从 中发现了三种植物化合物(1S-α-蒎烯、β-蒎烯和脱氢-对伞花烃)作为 DPP4 蛋白的潜在抑制剂。总之,根据我们的计算实验结果,我们提出脱氢-对伞花烃作为 DPP4 蛋白的潜在先导抑制剂,从而发现了一种用于有效管理高血糖和糖尿病的新植物化合物。该报告的化合物可以在不久的将来进行体外和体内分析。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/936d/9415412/1f3038fd8fbc/molecules-27-05133-g001.jpg

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